Experiment: Nalidixic 0.0078125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0728 and Synpcc7942_0729 are separated by 24 nucleotides Synpcc7942_0729 and Synpcc7942_0730 are separated by 214 nucleotides Synpcc7942_0730 and Synpcc7942_0731 are separated by 308 nucleotides
Synpcc7942_0728: Synpcc7942_0728 - hypothetical protein, at 723,236 to 723,781
_0728
Synpcc7942_0729: Synpcc7942_0729 - hypothetical protein, at 723,806 to 724,411
_0729
Synpcc7942_0730: Synpcc7942_0730 - hypothetical protein, at 724,626 to 725,165
_0730
Synpcc7942_0731: Synpcc7942_0731 - putative phage terminase large subunit, at 725,474 to 727,354
_0731
Position (kb) 724
725
726 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7 at 723.631 kb on - strand, within Synpcc7942_0728 at 723.631 kb on - strand, within Synpcc7942_0728 at 723.631 kb on - strand, within Synpcc7942_0728 at 723.631 kb on - strand, within Synpcc7942_0728 at 723.666 kb on - strand, within Synpcc7942_0728 at 723.667 kb on + strand, within Synpcc7942_0728 at 723.667 kb on - strand, within Synpcc7942_0728 at 723.673 kb on + strand, within Synpcc7942_0728 at 723.679 kb on + strand, within Synpcc7942_0728 at 723.681 kb on - strand, within Synpcc7942_0728 at 723.681 kb on - strand, within Synpcc7942_0728 at 723.681 kb on - strand, within Synpcc7942_0728 at 723.681 kb on - strand, within Synpcc7942_0728 at 723.681 kb on - strand at 723.687 kb on + strand, within Synpcc7942_0728 at 723.695 kb on - strand, within Synpcc7942_0728 at 723.705 kb on - strand, within Synpcc7942_0728 at 723.722 kb on + strand, within Synpcc7942_0728 at 723.746 kb on + strand at 723.746 kb on + strand at 723.746 kb on + strand at 723.746 kb on + strand at 723.746 kb on + strand at 723.762 kb on + strand at 723.770 kb on - strand at 723.792 kb on + strand at 723.797 kb on + strand at 723.797 kb on + strand at 723.797 kb on + strand at 723.797 kb on + strand at 723.797 kb on + strand at 723.805 kb on - strand at 723.805 kb on - strand at 723.806 kb on + strand at 723.830 kb on + strand at 723.830 kb on + strand at 723.830 kb on + strand at 723.838 kb on - strand at 723.858 kb on - strand at 723.878 kb on + strand, within Synpcc7942_0729 at 723.886 kb on - strand, within Synpcc7942_0729 at 723.914 kb on + strand, within Synpcc7942_0729 at 723.923 kb on - strand, within Synpcc7942_0729 at 723.949 kb on + strand, within Synpcc7942_0729 at 723.949 kb on + strand, within Synpcc7942_0729 at 723.951 kb on - strand, within Synpcc7942_0729 at 723.964 kb on + strand, within Synpcc7942_0729 at 724.005 kb on - strand, within Synpcc7942_0729 at 724.005 kb on - strand, within Synpcc7942_0729 at 724.023 kb on - strand, within Synpcc7942_0729 at 724.047 kb on + strand, within Synpcc7942_0729 at 724.047 kb on - strand, within Synpcc7942_0729 at 724.082 kb on - strand, within Synpcc7942_0729 at 724.082 kb on - strand, within Synpcc7942_0729 at 724.098 kb on - strand, within Synpcc7942_0729 at 724.107 kb on + strand, within Synpcc7942_0729 at 724.115 kb on - strand, within Synpcc7942_0729 at 724.130 kb on + strand, within Synpcc7942_0729 at 724.132 kb on + strand, within Synpcc7942_0729 at 724.138 kb on - strand, within Synpcc7942_0729 at 724.165 kb on + strand, within Synpcc7942_0729 at 724.165 kb on + strand, within Synpcc7942_0729 at 724.187 kb on + strand, within Synpcc7942_0729 at 724.187 kb on + strand, within Synpcc7942_0729 at 724.187 kb on + strand, within Synpcc7942_0729 at 724.187 kb on + strand, within Synpcc7942_0729 at 724.195 kb on - strand, within Synpcc7942_0729 at 724.195 kb on - strand, within Synpcc7942_0729 at 724.195 kb on - strand, within Synpcc7942_0729 at 724.195 kb on - strand, within Synpcc7942_0729 at 724.195 kb on - strand, within Synpcc7942_0729 at 724.198 kb on + strand, within Synpcc7942_0729 at 724.200 kb on + strand, within Synpcc7942_0729 at 724.200 kb on - strand, within Synpcc7942_0729 at 724.232 kb on - strand, within Synpcc7942_0729 at 724.244 kb on + strand, within Synpcc7942_0729 at 724.279 kb on + strand, within Synpcc7942_0729 at 724.336 kb on + strand, within Synpcc7942_0729 at 724.347 kb on + strand, within Synpcc7942_0729 at 724.347 kb on + strand, within Synpcc7942_0729 at 724.357 kb on + strand at 724.357 kb on + strand at 724.362 kb on + strand at 724.365 kb on - strand at 724.405 kb on + strand at 724.413 kb on - strand at 724.413 kb on - strand at 724.470 kb on + strand at 724.470 kb on + strand at 724.470 kb on + strand at 724.470 kb on + strand at 724.471 kb on - strand at 724.478 kb on - strand at 724.479 kb on - strand at 724.518 kb on - strand at 724.537 kb on - strand at 724.650 kb on - strand at 724.676 kb on + strand at 724.676 kb on + strand at 724.681 kb on + strand, within Synpcc7942_0730 at 724.681 kb on + strand, within Synpcc7942_0730 at 724.684 kb on - strand, within Synpcc7942_0730 at 724.684 kb on - strand, within Synpcc7942_0730 at 724.687 kb on - strand, within Synpcc7942_0730 at 724.696 kb on - strand, within Synpcc7942_0730 at 724.734 kb on + strand, within Synpcc7942_0730 at 724.742 kb on - strand, within Synpcc7942_0730 at 724.748 kb on + strand, within Synpcc7942_0730 at 724.748 kb on + strand, within Synpcc7942_0730 at 724.754 kb on - strand, within Synpcc7942_0730 at 724.777 kb on + strand at 724.777 kb on - strand, within Synpcc7942_0730 at 724.782 kb on + strand, within Synpcc7942_0730 at 724.810 kb on - strand, within Synpcc7942_0730 at 724.835 kb on + strand, within Synpcc7942_0730 at 724.852 kb on + strand, within Synpcc7942_0730 at 724.852 kb on + strand, within Synpcc7942_0730 at 724.860 kb on - strand, within Synpcc7942_0730 at 724.860 kb on - strand, within Synpcc7942_0730 at 724.868 kb on + strand, within Synpcc7942_0730 at 724.868 kb on + strand, within Synpcc7942_0730 at 724.868 kb on + strand, within Synpcc7942_0730 at 724.893 kb on - strand, within Synpcc7942_0730 at 724.894 kb on - strand, within Synpcc7942_0730 at 724.913 kb on + strand, within Synpcc7942_0730 at 724.913 kb on + strand, within Synpcc7942_0730 at 724.918 kb on - strand, within Synpcc7942_0730 at 724.921 kb on - strand, within Synpcc7942_0730 at 724.923 kb on - strand, within Synpcc7942_0730 at 724.927 kb on + strand, within Synpcc7942_0730 at 724.956 kb on - strand, within Synpcc7942_0730 at 724.965 kb on + strand, within Synpcc7942_0730 at 724.976 kb on - strand, within Synpcc7942_0730 at 725.004 kb on - strand, within Synpcc7942_0730 at 725.009 kb on - strand, within Synpcc7942_0730 at 725.036 kb on - strand, within Synpcc7942_0730 at 725.087 kb on - strand at 725.100 kb on + strand, within Synpcc7942_0730 at 725.100 kb on + strand, within Synpcc7942_0730 at 725.105 kb on + strand, within Synpcc7942_0730 at 725.113 kb on - strand at 725.146 kb on + strand at 725.157 kb on - strand at 725.167 kb on - strand at 725.192 kb on - strand at 725.273 kb on - strand at 725.297 kb on + strand at 725.351 kb on - strand at 725.443 kb on + strand at 725.455 kb on + strand at 725.455 kb on + strand at 725.455 kb on + strand at 725.455 kb on + strand at 725.455 kb on + strand at 725.463 kb on + strand at 725.463 kb on - strand at 725.463 kb on - strand at 725.463 kb on - strand at 725.465 kb on + strand at 725.465 kb on + strand at 725.471 kb on - strand at 725.471 kb on - strand at 725.473 kb on - strand at 725.473 kb on - strand at 725.522 kb on + strand at 725.522 kb on + strand at 725.524 kb on + strand at 725.524 kb on + strand at 725.532 kb on - strand at 725.569 kb on + strand at 725.604 kb on - strand at 725.645 kb on + strand at 725.655 kb on + strand at 725.655 kb on + strand at 725.655 kb on + strand at 725.655 kb on + strand at 725.655 kb on + strand at 725.655 kb on + strand at 725.655 kb on + strand at 725.655 kb on + strand at 725.655 kb on + strand at 725.655 kb on + strand at 725.655 kb on + strand at 725.655 kb on + strand at 725.655 kb on + strand at 725.655 kb on + strand at 725.655 kb on + strand at 725.655 kb on + strand at 725.655 kb on + strand at 725.663 kb on - strand, within Synpcc7942_0731 at 725.663 kb on - strand, within Synpcc7942_0731 at 725.663 kb on - strand, within Synpcc7942_0731 at 725.663 kb on - strand, within Synpcc7942_0731 at 725.663 kb on - strand, within Synpcc7942_0731 at 725.663 kb on - strand, within Synpcc7942_0731 at 725.663 kb on - strand, within Synpcc7942_0731 at 725.663 kb on - strand, within Synpcc7942_0731 at 725.663 kb on - strand, within Synpcc7942_0731 at 725.663 kb on - strand, within Synpcc7942_0731 at 725.663 kb on - strand, within Synpcc7942_0731 at 725.663 kb on - strand, within Synpcc7942_0731 at 725.683 kb on - strand, within Synpcc7942_0731 at 725.687 kb on + strand, within Synpcc7942_0731 at 725.715 kb on + strand, within Synpcc7942_0731 at 725.744 kb on - strand, within Synpcc7942_0731 at 725.771 kb on + strand, within Synpcc7942_0731 at 725.799 kb on + strand, within Synpcc7942_0731 at 725.799 kb on + strand, within Synpcc7942_0731 at 725.807 kb on - strand, within Synpcc7942_0731 at 725.824 kb on + strand, within Synpcc7942_0731 at 725.854 kb on + strand, within Synpcc7942_0731 at 725.876 kb on + strand, within Synpcc7942_0731 at 725.882 kb on + strand, within Synpcc7942_0731 at 725.890 kb on - strand, within Synpcc7942_0731 at 725.890 kb on - strand, within Synpcc7942_0731 at 725.901 kb on - strand, within Synpcc7942_0731 at 725.908 kb on + strand, within Synpcc7942_0731 at 725.909 kb on - strand, within Synpcc7942_0731 at 725.916 kb on - strand, within Synpcc7942_0731 at 725.930 kb on + strand, within Synpcc7942_0731 at 725.945 kb on + strand, within Synpcc7942_0731 at 725.953 kb on + strand, within Synpcc7942_0731 at 725.970 kb on + strand, within Synpcc7942_0731 at 726.004 kb on + strand, within Synpcc7942_0731 at 726.017 kb on - strand, within Synpcc7942_0731 at 726.111 kb on - strand, within Synpcc7942_0731 at 726.125 kb on - strand, within Synpcc7942_0731 at 726.161 kb on - strand, within Synpcc7942_0731
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.0078125 mg/ml remove 723,631 - Synpcc7942_0728 0.72 +2.6 723,631 - Synpcc7942_0728 0.72 -0.3 723,631 - Synpcc7942_0728 0.72 +1.0 723,631 - Synpcc7942_0728 0.72 -0.9 723,666 - Synpcc7942_0728 0.79 +0.9 723,667 + Synpcc7942_0728 0.79 -1.3 723,667 - Synpcc7942_0728 0.79 -1.9 723,673 + Synpcc7942_0728 0.80 -3.1 723,679 + Synpcc7942_0728 0.81 +0.3 723,681 - Synpcc7942_0728 0.82 +0.3 723,681 - Synpcc7942_0728 0.82 +2.0 723,681 - Synpcc7942_0728 0.82 +1.2 723,681 - Synpcc7942_0728 0.82 -2.9 723,681 - +2.7 723,687 + Synpcc7942_0728 0.83 +0.7 723,695 - Synpcc7942_0728 0.84 +1.3 723,705 - Synpcc7942_0728 0.86 +1.5 723,722 + Synpcc7942_0728 0.89 +1.7 723,746 + -1.3 723,746 + -0.3 723,746 + +2.3 723,746 + -0.3 723,746 + -2.1 723,762 + -1.3 723,770 - +2.3 723,792 + +0.7 723,797 + -0.1 723,797 + +0.2 723,797 + +0.6 723,797 + -1.6 723,797 + +1.7 723,805 - +0.1 723,805 - +0.3 723,806 + +1.4 723,830 + +2.9 723,830 + -0.9 723,830 + -0.3 723,838 - +0.2 723,858 - -2.3 723,878 + Synpcc7942_0729 0.12 -2.3 723,886 - Synpcc7942_0729 0.13 +0.8 723,914 + Synpcc7942_0729 0.18 +1.2 723,923 - Synpcc7942_0729 0.19 -0.0 723,949 + Synpcc7942_0729 0.24 +1.2 723,949 + Synpcc7942_0729 0.24 +3.1 723,951 - Synpcc7942_0729 0.24 +2.2 723,964 + Synpcc7942_0729 0.26 +2.7 724,005 - Synpcc7942_0729 0.33 +2.2 724,005 - Synpcc7942_0729 0.33 +2.2 724,023 - Synpcc7942_0729 0.36 +1.9 724,047 + Synpcc7942_0729 0.40 +2.4 724,047 - Synpcc7942_0729 0.40 +0.3 724,082 - Synpcc7942_0729 0.46 +2.5 724,082 - Synpcc7942_0729 0.46 -0.9 724,098 - Synpcc7942_0729 0.48 -0.3 724,107 + Synpcc7942_0729 0.50 -1.3 724,115 - Synpcc7942_0729 0.51 +1.9 724,130 + Synpcc7942_0729 0.53 +3.0 724,132 + Synpcc7942_0729 0.54 +0.5 724,138 - Synpcc7942_0729 0.55 -2.9 724,165 + Synpcc7942_0729 0.59 +1.2 724,165 + Synpcc7942_0729 0.59 -0.6 724,187 + Synpcc7942_0729 0.63 -1.3 724,187 + Synpcc7942_0729 0.63 -0.3 724,187 + Synpcc7942_0729 0.63 -0.3 724,187 + Synpcc7942_0729 0.63 +0.2 724,195 - Synpcc7942_0729 0.64 +1.9 724,195 - Synpcc7942_0729 0.64 -1.9 724,195 - Synpcc7942_0729 0.64 +1.6 724,195 - Synpcc7942_0729 0.64 +1.1 724,195 - Synpcc7942_0729 0.64 +3.7 724,198 + Synpcc7942_0729 0.65 +3.6 724,200 + Synpcc7942_0729 0.65 +0.7 724,200 - Synpcc7942_0729 0.65 -1.9 724,232 - Synpcc7942_0729 0.70 +1.7 724,244 + Synpcc7942_0729 0.72 +1.4 724,279 + Synpcc7942_0729 0.78 +2.0 724,336 + Synpcc7942_0729 0.87 -2.1 724,347 + Synpcc7942_0729 0.89 -1.9 724,347 + Synpcc7942_0729 0.89 -0.3 724,357 + +3.1 724,357 + +2.1 724,362 + +3.5 724,365 - +0.4 724,405 + +0.7 724,413 - +3.1 724,413 - +1.2 724,470 + -0.3 724,470 + -1.3 724,470 + +3.0 724,470 + +1.7 724,471 - -1.5 724,478 - +2.7 724,479 - +0.2 724,518 - +1.0 724,537 - -0.3 724,650 - -0.3 724,676 + +1.8 724,676 + +0.3 724,681 + Synpcc7942_0730 0.10 +1.9 724,681 + Synpcc7942_0730 0.10 +1.2 724,684 - Synpcc7942_0730 0.11 +0.8 724,684 - Synpcc7942_0730 0.11 +4.7 724,687 - Synpcc7942_0730 0.11 -0.9 724,696 - Synpcc7942_0730 0.13 +3.1 724,734 + Synpcc7942_0730 0.20 +0.5 724,742 - Synpcc7942_0730 0.21 +7.2 724,748 + Synpcc7942_0730 0.23 +0.3 724,748 + Synpcc7942_0730 0.23 -0.3 724,754 - Synpcc7942_0730 0.24 +0.8 724,777 + -1.3 724,777 - Synpcc7942_0730 0.28 +4.9 724,782 + Synpcc7942_0730 0.29 -0.3 724,810 - Synpcc7942_0730 0.34 +3.1 724,835 + Synpcc7942_0730 0.39 -1.3 724,852 + Synpcc7942_0730 0.42 +1.5 724,852 + Synpcc7942_0730 0.42 +3.0 724,860 - Synpcc7942_0730 0.43 +1.1 724,860 - Synpcc7942_0730 0.43 +1.3 724,868 + Synpcc7942_0730 0.45 +2.6 724,868 + Synpcc7942_0730 0.45 +2.8 724,868 + Synpcc7942_0730 0.45 +1.2 724,893 - Synpcc7942_0730 0.49 +2.6 724,894 - Synpcc7942_0730 0.50 +3.0 724,913 + Synpcc7942_0730 0.53 +2.9 724,913 + Synpcc7942_0730 0.53 +3.8 724,918 - Synpcc7942_0730 0.54 +0.7 724,921 - Synpcc7942_0730 0.55 +1.9 724,923 - Synpcc7942_0730 0.55 -0.3 724,927 + Synpcc7942_0730 0.56 +1.1 724,956 - Synpcc7942_0730 0.61 +0.8 724,965 + Synpcc7942_0730 0.63 +1.9 724,976 - Synpcc7942_0730 0.65 +2.2 725,004 - Synpcc7942_0730 0.70 +0.3 725,009 - Synpcc7942_0730 0.71 +1.0 725,036 - Synpcc7942_0730 0.76 +1.3 725,087 - -0.3 725,100 + Synpcc7942_0730 0.88 -1.3 725,100 + Synpcc7942_0730 0.88 -0.1 725,105 + Synpcc7942_0730 0.89 -1.7 725,113 - -0.3 725,146 + -0.3 725,157 - +0.1 725,167 - +1.7 725,192 - -0.3 725,273 - -1.3 725,297 + -1.3 725,351 - -1.5 725,443 + -0.3 725,455 + +2.0 725,455 + -1.3 725,455 + +1.3 725,455 + +2.8 725,455 + +0.1 725,463 + +1.0 725,463 - -0.3 725,463 - -0.3 725,463 - +0.9 725,465 + -1.9 725,465 + +4.5 725,471 - +0.1 725,471 - +3.2 725,473 - -0.3 725,473 - -0.3 725,522 + +1.5 725,522 + +1.3 725,524 + +3.6 725,524 + +2.5 725,532 - -1.9 725,569 + +1.3 725,604 - -1.9 725,645 + +2.1 725,655 + -1.3 725,655 + -0.3 725,655 + +0.5 725,655 + +1.7 725,655 + -0.0 725,655 + +1.3 725,655 + -0.3 725,655 + -0.0 725,655 + +3.8 725,655 + +0.7 725,655 + -1.9 725,655 + +2.1 725,655 + +2.8 725,655 + +3.7 725,655 + +1.7 725,655 + +0.7 725,655 + -1.3 725,663 - Synpcc7942_0731 0.10 +1.8 725,663 - Synpcc7942_0731 0.10 +2.7 725,663 - Synpcc7942_0731 0.10 -0.9 725,663 - Synpcc7942_0731 0.10 +2.3 725,663 - Synpcc7942_0731 0.10 +2.5 725,663 - Synpcc7942_0731 0.10 +3.3 725,663 - Synpcc7942_0731 0.10 +2.8 725,663 - Synpcc7942_0731 0.10 +1.2 725,663 - Synpcc7942_0731 0.10 +1.0 725,663 - Synpcc7942_0731 0.10 +1.2 725,663 - Synpcc7942_0731 0.10 +0.6 725,663 - Synpcc7942_0731 0.10 +1.7 725,683 - Synpcc7942_0731 0.11 +1.2 725,687 + Synpcc7942_0731 0.11 +2.8 725,715 + Synpcc7942_0731 0.13 -2.3 725,744 - Synpcc7942_0731 0.14 +1.6 725,771 + Synpcc7942_0731 0.16 +0.9 725,799 + Synpcc7942_0731 0.17 -2.7 725,799 + Synpcc7942_0731 0.17 +1.2 725,807 - Synpcc7942_0731 0.18 +1.8 725,824 + Synpcc7942_0731 0.19 -1.3 725,854 + Synpcc7942_0731 0.20 +1.5 725,876 + Synpcc7942_0731 0.21 +1.2 725,882 + Synpcc7942_0731 0.22 +1.8 725,890 - Synpcc7942_0731 0.22 -0.9 725,890 - Synpcc7942_0731 0.22 +2.2 725,901 - Synpcc7942_0731 0.23 +0.3 725,908 + Synpcc7942_0731 0.23 +4.4 725,909 - Synpcc7942_0731 0.23 +1.8 725,916 - Synpcc7942_0731 0.23 +1.6 725,930 + Synpcc7942_0731 0.24 +3.1 725,945 + Synpcc7942_0731 0.25 +1.2 725,953 + Synpcc7942_0731 0.25 -0.3 725,970 + Synpcc7942_0731 0.26 +2.0 726,004 + Synpcc7942_0731 0.28 -1.6 726,017 - Synpcc7942_0731 0.29 +1.8 726,111 - Synpcc7942_0731 0.34 +2.7 726,125 - Synpcc7942_0731 0.35 +2.2 726,161 - Synpcc7942_0731 0.37 -1.1
Or see this region's nucleotide sequence