Experiment: Nalidixic 0.0078125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ribF and Synpcc7942_0493 are separated by 142 nucleotides Synpcc7942_0493 and Synpcc7942_0494 are separated by 179 nucleotides Synpcc7942_0494 and Synpcc7942_0495 overlap by 4 nucleotides
Synpcc7942_0492: ribF - bifunctional riboflavin kinase/FMN adenylyltransferase, at 479,877 to 480,824
ribF
Synpcc7942_0493: Synpcc7942_0493 - hypothetical protein, at 480,967 to 482,451
_0493
Synpcc7942_0494: Synpcc7942_0494 - hypothetical protein, at 482,631 to 482,984
_0494
Synpcc7942_0495: Synpcc7942_0495 - hypothetical protein, at 482,981 to 483,517
_0495
Position (kb) 480
481
482
483 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 480.839 kb on - strand at 480.848 kb on + strand at 480.853 kb on + strand at 480.853 kb on + strand at 480.861 kb on - strand at 480.862 kb on - strand at 480.862 kb on - strand at 480.862 kb on - strand at 480.887 kb on + strand at 480.887 kb on + strand at 480.887 kb on + strand at 480.895 kb on - strand at 480.895 kb on - strand at 480.895 kb on - strand at 480.895 kb on - strand at 480.895 kb on - strand at 480.910 kb on - strand at 480.913 kb on + strand at 480.936 kb on + strand at 480.977 kb on + strand at 480.977 kb on + strand at 481.096 kb on - strand at 481.099 kb on + strand at 481.135 kb on + strand, within Synpcc7942_0493 at 481.143 kb on - strand, within Synpcc7942_0493 at 481.169 kb on + strand, within Synpcc7942_0493 at 481.169 kb on + strand, within Synpcc7942_0493 at 481.251 kb on + strand, within Synpcc7942_0493 at 481.265 kb on - strand, within Synpcc7942_0493 at 481.289 kb on - strand, within Synpcc7942_0493 at 481.333 kb on + strand, within Synpcc7942_0493 at 481.357 kb on - strand, within Synpcc7942_0493 at 481.359 kb on + strand, within Synpcc7942_0493 at 481.367 kb on - strand, within Synpcc7942_0493 at 481.394 kb on + strand, within Synpcc7942_0493 at 481.419 kb on - strand, within Synpcc7942_0493 at 481.428 kb on - strand, within Synpcc7942_0493 at 481.438 kb on - strand, within Synpcc7942_0493 at 481.473 kb on + strand, within Synpcc7942_0493 at 481.473 kb on + strand, within Synpcc7942_0493 at 481.521 kb on + strand, within Synpcc7942_0493 at 481.521 kb on + strand, within Synpcc7942_0493 at 481.521 kb on + strand, within Synpcc7942_0493 at 481.521 kb on + strand, within Synpcc7942_0493 at 481.533 kb on - strand, within Synpcc7942_0493 at 481.597 kb on - strand, within Synpcc7942_0493 at 481.597 kb on - strand, within Synpcc7942_0493 at 481.674 kb on + strand, within Synpcc7942_0493 at 481.682 kb on - strand, within Synpcc7942_0493 at 481.689 kb on + strand, within Synpcc7942_0493 at 481.697 kb on - strand, within Synpcc7942_0493 at 481.702 kb on - strand, within Synpcc7942_0493 at 481.708 kb on - strand, within Synpcc7942_0493 at 481.709 kb on - strand, within Synpcc7942_0493 at 481.783 kb on - strand, within Synpcc7942_0493 at 481.862 kb on + strand, within Synpcc7942_0493 at 481.867 kb on + strand, within Synpcc7942_0493 at 481.907 kb on - strand, within Synpcc7942_0493 at 481.908 kb on - strand, within Synpcc7942_0493 at 481.957 kb on + strand at 481.959 kb on + strand, within Synpcc7942_0493 at 481.962 kb on + strand, within Synpcc7942_0493 at 481.974 kb on + strand, within Synpcc7942_0493 at 481.974 kb on + strand, within Synpcc7942_0493 at 481.982 kb on - strand, within Synpcc7942_0493 at 481.987 kb on - strand, within Synpcc7942_0493 at 482.030 kb on - strand, within Synpcc7942_0493 at 482.071 kb on + strand, within Synpcc7942_0493 at 482.084 kb on - strand, within Synpcc7942_0493 at 482.091 kb on + strand, within Synpcc7942_0493 at 482.100 kb on - strand, within Synpcc7942_0493 at 482.156 kb on - strand, within Synpcc7942_0493 at 482.178 kb on - strand, within Synpcc7942_0493 at 482.181 kb on - strand, within Synpcc7942_0493 at 482.181 kb on - strand, within Synpcc7942_0493 at 482.189 kb on + strand, within Synpcc7942_0493 at 482.218 kb on + strand, within Synpcc7942_0493 at 482.228 kb on + strand, within Synpcc7942_0493 at 482.239 kb on + strand, within Synpcc7942_0493 at 482.239 kb on + strand, within Synpcc7942_0493 at 482.239 kb on + strand at 482.239 kb on + strand, within Synpcc7942_0493 at 482.247 kb on - strand, within Synpcc7942_0493 at 482.252 kb on + strand, within Synpcc7942_0493 at 482.252 kb on + strand at 482.252 kb on + strand, within Synpcc7942_0493 at 482.286 kb on + strand, within Synpcc7942_0493 at 482.318 kb on - strand at 482.318 kb on - strand at 482.318 kb on - strand at 482.362 kb on + strand at 482.386 kb on + strand at 482.400 kb on - strand at 482.445 kb on + strand at 482.445 kb on + strand at 482.462 kb on - strand at 482.470 kb on + strand at 482.486 kb on + strand at 482.488 kb on - strand at 482.503 kb on - strand at 482.508 kb on - strand at 482.524 kb on + strand at 482.608 kb on - strand at 482.659 kb on + strand at 482.667 kb on - strand, within Synpcc7942_0494 at 482.667 kb on - strand, within Synpcc7942_0494 at 482.687 kb on + strand, within Synpcc7942_0494 at 482.818 kb on + strand, within Synpcc7942_0494 at 482.835 kb on + strand, within Synpcc7942_0494 at 482.835 kb on + strand, within Synpcc7942_0494 at 482.838 kb on - strand, within Synpcc7942_0494 at 482.842 kb on + strand, within Synpcc7942_0494 at 482.842 kb on + strand, within Synpcc7942_0494 at 482.845 kb on + strand, within Synpcc7942_0494 at 482.845 kb on + strand, within Synpcc7942_0494 at 482.845 kb on + strand, within Synpcc7942_0494 at 482.847 kb on + strand, within Synpcc7942_0494 at 482.853 kb on - strand, within Synpcc7942_0494 at 482.886 kb on + strand, within Synpcc7942_0494 at 482.908 kb on + strand, within Synpcc7942_0494 at 482.921 kb on - strand, within Synpcc7942_0494 at 482.928 kb on + strand, within Synpcc7942_0494 at 482.928 kb on - strand, within Synpcc7942_0494 at 482.931 kb on - strand, within Synpcc7942_0494 at 482.934 kb on + strand, within Synpcc7942_0494 at 482.934 kb on + strand, within Synpcc7942_0494 at 482.939 kb on + strand, within Synpcc7942_0494 at 482.952 kb on - strand at 482.975 kb on + strand at 482.984 kb on + strand at 482.986 kb on + strand at 482.992 kb on - strand at 482.992 kb on - strand at 483.050 kb on - strand, within Synpcc7942_0495 at 483.085 kb on + strand, within Synpcc7942_0495 at 483.102 kb on - strand, within Synpcc7942_0495 at 483.106 kb on + strand, within Synpcc7942_0495 at 483.106 kb on + strand, within Synpcc7942_0495 at 483.114 kb on - strand, within Synpcc7942_0495 at 483.114 kb on - strand at 483.119 kb on - strand at 483.133 kb on + strand, within Synpcc7942_0495 at 483.148 kb on + strand, within Synpcc7942_0495 at 483.170 kb on - strand, within Synpcc7942_0495 at 483.170 kb on - strand, within Synpcc7942_0495 at 483.325 kb on - strand, within Synpcc7942_0495 at 483.435 kb on - strand, within Synpcc7942_0495
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.0078125 mg/ml remove 480,839 - +0.3 480,848 + +2.2 480,853 + -1.9 480,853 + -1.0 480,861 - +0.9 480,862 - +1.4 480,862 - -1.3 480,862 - -0.7 480,887 + +2.3 480,887 + +0.0 480,887 + +2.5 480,895 - -1.0 480,895 - +0.7 480,895 - +0.7 480,895 - +1.7 480,895 - -2.3 480,910 - +3.2 480,913 + -1.3 480,936 + +2.0 480,977 + -1.3 480,977 + +3.5 481,096 - +6.1 481,099 + -0.3 481,135 + Synpcc7942_0493 0.11 +3.7 481,143 - Synpcc7942_0493 0.12 +2.0 481,169 + Synpcc7942_0493 0.14 +2.6 481,169 + Synpcc7942_0493 0.14 -1.3 481,251 + Synpcc7942_0493 0.19 +1.7 481,265 - Synpcc7942_0493 0.20 +0.9 481,289 - Synpcc7942_0493 0.22 +3.4 481,333 + Synpcc7942_0493 0.25 +2.0 481,357 - Synpcc7942_0493 0.26 +0.4 481,359 + Synpcc7942_0493 0.26 -0.3 481,367 - Synpcc7942_0493 0.27 -0.3 481,394 + Synpcc7942_0493 0.29 +2.3 481,419 - Synpcc7942_0493 0.30 -0.3 481,428 - Synpcc7942_0493 0.31 +0.5 481,438 - Synpcc7942_0493 0.32 -1.3 481,473 + Synpcc7942_0493 0.34 +2.4 481,473 + Synpcc7942_0493 0.34 +3.2 481,521 + Synpcc7942_0493 0.37 -1.3 481,521 + Synpcc7942_0493 0.37 +0.9 481,521 + Synpcc7942_0493 0.37 +3.5 481,521 + Synpcc7942_0493 0.37 -1.3 481,533 - Synpcc7942_0493 0.38 +2.2 481,597 - Synpcc7942_0493 0.42 +3.4 481,597 - Synpcc7942_0493 0.42 +0.9 481,674 + Synpcc7942_0493 0.48 -1.9 481,682 - Synpcc7942_0493 0.48 -1.3 481,689 + Synpcc7942_0493 0.49 +3.7 481,697 - Synpcc7942_0493 0.49 +3.1 481,702 - Synpcc7942_0493 0.49 -2.3 481,708 - Synpcc7942_0493 0.50 +2.6 481,709 - Synpcc7942_0493 0.50 +0.4 481,783 - Synpcc7942_0493 0.55 -1.3 481,862 + Synpcc7942_0493 0.60 +2.9 481,867 + Synpcc7942_0493 0.61 +2.5 481,907 - Synpcc7942_0493 0.63 -0.3 481,908 - Synpcc7942_0493 0.63 +3.0 481,957 + +2.9 481,959 + Synpcc7942_0493 0.67 -1.3 481,962 + Synpcc7942_0493 0.67 +2.4 481,974 + Synpcc7942_0493 0.68 -1.3 481,974 + Synpcc7942_0493 0.68 -0.3 481,982 - Synpcc7942_0493 0.68 +1.6 481,987 - Synpcc7942_0493 0.69 +4.0 482,030 - Synpcc7942_0493 0.72 +0.4 482,071 + Synpcc7942_0493 0.74 +2.0 482,084 - Synpcc7942_0493 0.75 +0.5 482,091 + Synpcc7942_0493 0.76 +2.6 482,100 - Synpcc7942_0493 0.76 -0.3 482,156 - Synpcc7942_0493 0.80 +2.5 482,178 - Synpcc7942_0493 0.82 +2.8 482,181 - Synpcc7942_0493 0.82 +2.2 482,181 - Synpcc7942_0493 0.82 -0.3 482,189 + Synpcc7942_0493 0.82 -0.3 482,218 + Synpcc7942_0493 0.84 -1.3 482,228 + Synpcc7942_0493 0.85 +1.4 482,239 + Synpcc7942_0493 0.86 -0.3 482,239 + Synpcc7942_0493 0.86 -0.3 482,239 + -0.3 482,239 + Synpcc7942_0493 0.86 +0.5 482,247 - Synpcc7942_0493 0.86 +2.1 482,252 + Synpcc7942_0493 0.87 -0.3 482,252 + -1.3 482,252 + Synpcc7942_0493 0.87 +0.7 482,286 + Synpcc7942_0493 0.89 -0.3 482,318 - +0.8 482,318 - -1.9 482,318 - +1.7 482,362 + +2.2 482,386 + +1.4 482,400 - -0.3 482,445 + +2.3 482,445 + +1.9 482,462 - +2.2 482,470 + +0.1 482,486 + +0.4 482,488 - -0.3 482,503 - +4.8 482,508 - +1.3 482,524 + -1.3 482,608 - +3.4 482,659 + -0.3 482,667 - Synpcc7942_0494 0.10 -1.9 482,667 - Synpcc7942_0494 0.10 +0.5 482,687 + Synpcc7942_0494 0.16 -0.3 482,818 + Synpcc7942_0494 0.53 -2.3 482,835 + Synpcc7942_0494 0.58 +0.4 482,835 + Synpcc7942_0494 0.58 -1.3 482,838 - Synpcc7942_0494 0.58 -0.3 482,842 + Synpcc7942_0494 0.60 -0.3 482,842 + Synpcc7942_0494 0.60 +1.5 482,845 + Synpcc7942_0494 0.60 -0.3 482,845 + Synpcc7942_0494 0.60 +2.6 482,845 + Synpcc7942_0494 0.60 +1.1 482,847 + Synpcc7942_0494 0.61 +1.9 482,853 - Synpcc7942_0494 0.63 -1.3 482,886 + Synpcc7942_0494 0.72 +2.4 482,908 + Synpcc7942_0494 0.78 +0.4 482,921 - Synpcc7942_0494 0.82 +2.0 482,928 + Synpcc7942_0494 0.84 +2.9 482,928 - Synpcc7942_0494 0.84 +3.1 482,931 - Synpcc7942_0494 0.85 +0.9 482,934 + Synpcc7942_0494 0.86 -1.9 482,934 + Synpcc7942_0494 0.86 -3.1 482,939 + Synpcc7942_0494 0.87 +1.5 482,952 - -2.6 482,975 + -1.9 482,984 + -2.9 482,986 + -1.3 482,992 - +1.6 482,992 - +0.5 483,050 - Synpcc7942_0495 0.13 -0.3 483,085 + Synpcc7942_0495 0.19 -0.5 483,102 - Synpcc7942_0495 0.23 +1.2 483,106 + Synpcc7942_0495 0.23 +2.8 483,106 + Synpcc7942_0495 0.23 +1.9 483,114 - Synpcc7942_0495 0.25 +2.4 483,114 - +4.6 483,119 - -0.3 483,133 + Synpcc7942_0495 0.28 +2.4 483,148 + Synpcc7942_0495 0.31 -0.3 483,170 - Synpcc7942_0495 0.35 +1.3 483,170 - Synpcc7942_0495 0.35 +1.0 483,325 - Synpcc7942_0495 0.64 -1.3 483,435 - Synpcc7942_0495 0.85 +0.7
Or see this region's nucleotide sequence