Experiment: Nalidixic 0.0078125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0459 and Synpcc7942_0460 are separated by 139 nucleotides Synpcc7942_0460 and Synpcc7942_0461 are separated by 96 nucleotides Synpcc7942_0461 and Synpcc7942_0462 are separated by 56 nucleotides Synpcc7942_0462 and Synpcc7942_0463 overlap by 1 nucleotides
Synpcc7942_0459: Synpcc7942_0459 - glutathione-dependent formaldehyde dehydrogenase, at 447,057 to 448,166
_0459
Synpcc7942_0460: Synpcc7942_0460 - putative acetyltransferase, at 448,306 to 448,779
_0460
Synpcc7942_0461: Synpcc7942_0461 - hypothetical protein, at 448,876 to 449,313
_0461
Synpcc7942_0462: Synpcc7942_0462 - hypothetical protein, at 449,370 to 449,957
_0462
Synpcc7942_0463: Synpcc7942_0463 - protein tyrosine phosphatase, at 449,957 to 450,448
_0463
Position (kb) 448
449
450 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 447.893 kb on + strand, within Synpcc7942_0459 at 447.911 kb on + strand, within Synpcc7942_0459 at 447.939 kb on + strand, within Synpcc7942_0459 at 447.939 kb on + strand, within Synpcc7942_0459 at 447.940 kb on + strand, within Synpcc7942_0459 at 447.963 kb on + strand, within Synpcc7942_0459 at 447.992 kb on - strand, within Synpcc7942_0459 at 448.028 kb on + strand, within Synpcc7942_0459 at 448.036 kb on - strand, within Synpcc7942_0459 at 448.036 kb on - strand, within Synpcc7942_0459 at 448.042 kb on + strand, within Synpcc7942_0459 at 448.050 kb on - strand, within Synpcc7942_0459 at 448.094 kb on - strand at 448.094 kb on - strand at 448.138 kb on + strand at 448.146 kb on - strand at 448.177 kb on - strand at 448.196 kb on + strand at 448.245 kb on + strand at 448.251 kb on + strand at 448.251 kb on + strand at 448.275 kb on - strand at 448.275 kb on - strand at 448.296 kb on - strand at 448.309 kb on + strand at 448.329 kb on + strand at 448.329 kb on + strand at 448.329 kb on + strand at 448.341 kb on + strand at 448.341 kb on + strand at 448.346 kb on + strand at 448.346 kb on + strand at 448.346 kb on + strand at 448.354 kb on - strand, within Synpcc7942_0460 at 448.414 kb on + strand, within Synpcc7942_0460 at 448.418 kb on + strand, within Synpcc7942_0460 at 448.436 kb on - strand, within Synpcc7942_0460 at 448.436 kb on - strand, within Synpcc7942_0460 at 448.443 kb on - strand, within Synpcc7942_0460 at 448.449 kb on - strand, within Synpcc7942_0460 at 448.483 kb on - strand, within Synpcc7942_0460 at 448.510 kb on + strand, within Synpcc7942_0460 at 448.511 kb on + strand, within Synpcc7942_0460 at 448.529 kb on - strand, within Synpcc7942_0460 at 448.552 kb on - strand, within Synpcc7942_0460 at 448.610 kb on - strand, within Synpcc7942_0460 at 448.669 kb on + strand, within Synpcc7942_0460 at 448.701 kb on + strand, within Synpcc7942_0460 at 448.712 kb on + strand, within Synpcc7942_0460 at 448.772 kb on - strand at 448.779 kb on - strand at 448.818 kb on - strand at 448.841 kb on - strand at 448.847 kb on + strand at 448.849 kb on + strand at 448.849 kb on + strand at 448.895 kb on + strand at 448.895 kb on + strand at 448.896 kb on + strand at 448.896 kb on + strand at 448.953 kb on - strand, within Synpcc7942_0461 at 448.953 kb on - strand, within Synpcc7942_0461 at 448.953 kb on - strand, within Synpcc7942_0461 at 448.965 kb on - strand, within Synpcc7942_0461 at 449.131 kb on + strand, within Synpcc7942_0461 at 449.139 kb on - strand, within Synpcc7942_0461 at 449.139 kb on - strand, within Synpcc7942_0461 at 449.139 kb on - strand, within Synpcc7942_0461 at 449.141 kb on + strand, within Synpcc7942_0461 at 449.176 kb on + strand, within Synpcc7942_0461 at 449.192 kb on + strand, within Synpcc7942_0461 at 449.192 kb on + strand, within Synpcc7942_0461 at 449.195 kb on - strand, within Synpcc7942_0461 at 449.200 kb on - strand, within Synpcc7942_0461 at 449.200 kb on - strand, within Synpcc7942_0461 at 449.200 kb on - strand, within Synpcc7942_0461 at 449.200 kb on - strand, within Synpcc7942_0461 at 449.200 kb on - strand, within Synpcc7942_0461 at 449.200 kb on - strand, within Synpcc7942_0461 at 449.200 kb on - strand, within Synpcc7942_0461 at 449.200 kb on - strand, within Synpcc7942_0461 at 449.225 kb on - strand, within Synpcc7942_0461 at 449.248 kb on + strand, within Synpcc7942_0461 at 449.250 kb on + strand, within Synpcc7942_0461 at 449.272 kb on + strand at 449.288 kb on + strand at 449.288 kb on + strand at 449.296 kb on - strand at 449.310 kb on + strand at 449.337 kb on + strand at 449.345 kb on - strand at 449.361 kb on + strand at 449.361 kb on - strand at 449.472 kb on + strand, within Synpcc7942_0462 at 449.480 kb on - strand, within Synpcc7942_0462 at 449.481 kb on + strand, within Synpcc7942_0462 at 449.499 kb on - strand, within Synpcc7942_0462 at 449.509 kb on + strand, within Synpcc7942_0462 at 449.509 kb on + strand, within Synpcc7942_0462 at 449.517 kb on - strand, within Synpcc7942_0462 at 449.519 kb on + strand, within Synpcc7942_0462 at 449.532 kb on - strand, within Synpcc7942_0462 at 449.534 kb on - strand, within Synpcc7942_0462 at 449.602 kb on + strand, within Synpcc7942_0462 at 449.602 kb on + strand, within Synpcc7942_0462 at 449.602 kb on + strand, within Synpcc7942_0462 at 449.610 kb on - strand, within Synpcc7942_0462 at 449.610 kb on - strand, within Synpcc7942_0462 at 449.617 kb on + strand, within Synpcc7942_0462 at 449.637 kb on + strand, within Synpcc7942_0462 at 449.637 kb on + strand, within Synpcc7942_0462 at 449.637 kb on + strand, within Synpcc7942_0462 at 449.637 kb on + strand, within Synpcc7942_0462 at 449.645 kb on - strand, within Synpcc7942_0462 at 449.645 kb on - strand, within Synpcc7942_0462 at 449.652 kb on + strand, within Synpcc7942_0462 at 449.664 kb on + strand, within Synpcc7942_0462 at 449.671 kb on + strand, within Synpcc7942_0462 at 449.672 kb on - strand, within Synpcc7942_0462 at 449.672 kb on - strand, within Synpcc7942_0462 at 449.683 kb on + strand, within Synpcc7942_0462 at 449.685 kb on + strand, within Synpcc7942_0462 at 449.731 kb on - strand, within Synpcc7942_0462 at 449.736 kb on + strand, within Synpcc7942_0462 at 449.805 kb on - strand, within Synpcc7942_0462 at 449.810 kb on - strand, within Synpcc7942_0462 at 449.876 kb on - strand, within Synpcc7942_0462 at 449.886 kb on + strand, within Synpcc7942_0462 at 449.886 kb on + strand, within Synpcc7942_0462 at 449.887 kb on + strand, within Synpcc7942_0462 at 449.894 kb on - strand at 449.900 kb on - strand at 449.967 kb on + strand at 449.967 kb on + strand at 449.967 kb on + strand at 449.975 kb on - strand at 449.975 kb on - strand at 449.975 kb on - strand at 449.975 kb on - strand at 449.981 kb on + strand at 450.048 kb on - strand, within Synpcc7942_0463 at 450.060 kb on + strand, within Synpcc7942_0463 at 450.068 kb on - strand, within Synpcc7942_0463 at 450.070 kb on - strand, within Synpcc7942_0463 at 450.131 kb on + strand, within Synpcc7942_0463 at 450.132 kb on - strand at 450.165 kb on - strand, within Synpcc7942_0463 at 450.189 kb on + strand, within Synpcc7942_0463 at 450.216 kb on - strand, within Synpcc7942_0463 at 450.237 kb on + strand, within Synpcc7942_0463 at 450.237 kb on + strand, within Synpcc7942_0463 at 450.245 kb on - strand, within Synpcc7942_0463 at 450.245 kb on - strand, within Synpcc7942_0463 at 450.245 kb on - strand, within Synpcc7942_0463 at 450.247 kb on + strand, within Synpcc7942_0463 at 450.250 kb on + strand, within Synpcc7942_0463
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.0078125 mg/ml remove 447,893 + Synpcc7942_0459 0.75 +0.3 447,911 + Synpcc7942_0459 0.77 -1.3 447,939 + Synpcc7942_0459 0.79 -0.3 447,939 + Synpcc7942_0459 0.79 +1.0 447,940 + Synpcc7942_0459 0.80 -1.9 447,963 + Synpcc7942_0459 0.82 -2.9 447,992 - Synpcc7942_0459 0.84 -0.3 448,028 + Synpcc7942_0459 0.87 -0.3 448,036 - Synpcc7942_0459 0.88 -0.3 448,036 - Synpcc7942_0459 0.88 -0.3 448,042 + Synpcc7942_0459 0.89 +1.2 448,050 - Synpcc7942_0459 0.89 -1.9 448,094 - +2.0 448,094 - +3.8 448,138 + +0.9 448,146 - +0.7 448,177 - +1.3 448,196 + +1.3 448,245 + -1.9 448,251 + +1.9 448,251 + +1.7 448,275 - +0.3 448,275 - +0.7 448,296 - +0.6 448,309 + +1.4 448,329 + -0.7 448,329 + -1.9 448,329 + +1.7 448,341 + -1.9 448,341 + -1.9 448,346 + +1.5 448,346 + +3.9 448,346 + -1.9 448,354 - Synpcc7942_0460 0.10 -0.3 448,414 + Synpcc7942_0460 0.23 -0.3 448,418 + Synpcc7942_0460 0.24 +6.7 448,436 - Synpcc7942_0460 0.27 +2.2 448,436 - Synpcc7942_0460 0.27 -1.3 448,443 - Synpcc7942_0460 0.29 +5.3 448,449 - Synpcc7942_0460 0.30 +2.6 448,483 - Synpcc7942_0460 0.37 -2.6 448,510 + Synpcc7942_0460 0.43 +2.0 448,511 + Synpcc7942_0460 0.43 +3.3 448,529 - Synpcc7942_0460 0.47 +2.6 448,552 - Synpcc7942_0460 0.52 +1.5 448,610 - Synpcc7942_0460 0.64 +0.2 448,669 + Synpcc7942_0460 0.77 +1.5 448,701 + Synpcc7942_0460 0.83 +0.4 448,712 + Synpcc7942_0460 0.86 +1.1 448,772 - -1.3 448,779 - +1.0 448,818 - -0.3 448,841 - -2.6 448,847 + -1.3 448,849 + +1.8 448,849 + -0.3 448,895 + +0.2 448,895 + +3.2 448,896 + +0.9 448,896 + -0.5 448,953 - Synpcc7942_0461 0.18 +0.6 448,953 - Synpcc7942_0461 0.18 +3.8 448,953 - Synpcc7942_0461 0.18 +2.1 448,965 - Synpcc7942_0461 0.20 +2.5 449,131 + Synpcc7942_0461 0.58 +0.7 449,139 - Synpcc7942_0461 0.60 +1.6 449,139 - Synpcc7942_0461 0.60 +1.3 449,139 - Synpcc7942_0461 0.60 +0.7 449,141 + Synpcc7942_0461 0.61 +2.6 449,176 + Synpcc7942_0461 0.68 -0.3 449,192 + Synpcc7942_0461 0.72 -0.6 449,192 + Synpcc7942_0461 0.72 +3.5 449,195 - Synpcc7942_0461 0.73 +1.6 449,200 - Synpcc7942_0461 0.74 -0.3 449,200 - Synpcc7942_0461 0.74 +2.8 449,200 - Synpcc7942_0461 0.74 -0.3 449,200 - Synpcc7942_0461 0.74 +0.6 449,200 - Synpcc7942_0461 0.74 -1.3 449,200 - Synpcc7942_0461 0.74 +1.3 449,200 - Synpcc7942_0461 0.74 -0.3 449,200 - Synpcc7942_0461 0.74 +1.7 449,225 - Synpcc7942_0461 0.80 -0.3 449,248 + Synpcc7942_0461 0.85 -1.9 449,250 + Synpcc7942_0461 0.85 -0.3 449,272 + +1.3 449,288 + -1.5 449,288 + +2.4 449,296 - +2.5 449,310 + +0.7 449,337 + +0.5 449,345 - -0.3 449,361 + +2.4 449,361 - -1.3 449,472 + Synpcc7942_0462 0.17 +3.0 449,480 - Synpcc7942_0462 0.19 +0.9 449,481 + Synpcc7942_0462 0.19 -1.3 449,499 - Synpcc7942_0462 0.22 +1.0 449,509 + Synpcc7942_0462 0.24 -1.3 449,509 + Synpcc7942_0462 0.24 -0.3 449,517 - Synpcc7942_0462 0.25 +3.4 449,519 + Synpcc7942_0462 0.25 +4.3 449,532 - Synpcc7942_0462 0.28 +2.0 449,534 - Synpcc7942_0462 0.28 +1.3 449,602 + Synpcc7942_0462 0.39 +0.7 449,602 + Synpcc7942_0462 0.39 +0.3 449,602 + Synpcc7942_0462 0.39 -1.3 449,610 - Synpcc7942_0462 0.41 +0.9 449,610 - Synpcc7942_0462 0.41 -1.3 449,617 + Synpcc7942_0462 0.42 -1.9 449,637 + Synpcc7942_0462 0.45 +1.6 449,637 + Synpcc7942_0462 0.45 +3.0 449,637 + Synpcc7942_0462 0.45 +1.5 449,637 + Synpcc7942_0462 0.45 +2.3 449,645 - Synpcc7942_0462 0.47 +1.7 449,645 - Synpcc7942_0462 0.47 +0.2 449,652 + Synpcc7942_0462 0.48 +2.2 449,664 + Synpcc7942_0462 0.50 +0.7 449,671 + Synpcc7942_0462 0.51 +4.8 449,672 - Synpcc7942_0462 0.51 +2.9 449,672 - Synpcc7942_0462 0.51 -0.2 449,683 + Synpcc7942_0462 0.53 +4.8 449,685 + Synpcc7942_0462 0.54 +2.8 449,731 - Synpcc7942_0462 0.61 +0.6 449,736 + Synpcc7942_0462 0.62 +2.3 449,805 - Synpcc7942_0462 0.74 +3.0 449,810 - Synpcc7942_0462 0.75 -3.4 449,876 - Synpcc7942_0462 0.86 +0.7 449,886 + Synpcc7942_0462 0.88 +1.5 449,886 + Synpcc7942_0462 0.88 +2.8 449,887 + Synpcc7942_0462 0.88 -0.2 449,894 - -0.3 449,900 - +2.5 449,967 + +0.0 449,967 + -0.3 449,967 + +2.0 449,975 - +1.2 449,975 - -2.3 449,975 - -0.3 449,975 - -2.6 449,981 + +2.9 450,048 - Synpcc7942_0463 0.18 +2.6 450,060 + Synpcc7942_0463 0.21 +1.7 450,068 - Synpcc7942_0463 0.23 +2.3 450,070 - Synpcc7942_0463 0.23 -0.3 450,131 + Synpcc7942_0463 0.35 +2.1 450,132 - -0.3 450,165 - Synpcc7942_0463 0.42 +1.5 450,189 + Synpcc7942_0463 0.47 -0.3 450,216 - Synpcc7942_0463 0.53 +5.4 450,237 + Synpcc7942_0463 0.57 +1.7 450,237 + Synpcc7942_0463 0.57 -2.3 450,245 - Synpcc7942_0463 0.59 +0.1 450,245 - Synpcc7942_0463 0.59 +3.0 450,245 - Synpcc7942_0463 0.59 +2.0 450,247 + Synpcc7942_0463 0.59 +0.7 450,250 + Synpcc7942_0463 0.60 +2.0
Or see this region's nucleotide sequence