Experiment: Nalidixic 0.0078125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ymxG and pqqE overlap by 4 nucleotides pqqE and rpoD4 are separated by 0 nucleotides rpoD4 and ycf63 are separated by 325 nucleotides
Synpcc7942_0375: ymxG - processing protease, at 368,929 to 370,344
ymxG
Synpcc7942_0376: pqqE - putative zinc protease protein, at 370,341 to 371,867
pqqE
Synpcc7942_0377: rpoD4 - hypothetical protein, at 371,868 to 372,206
rpoD4
Synpcc7942_0378: ycf63 - Protein of unknown function DUF140, at 372,532 to 373,326
ycf63
Position (kb) 370
371
372 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 369.359 kb on + strand, within ymxG at 369.372 kb on - strand, within ymxG at 369.377 kb on - strand, within ymxG at 369.382 kb on - strand, within ymxG at 369.384 kb on - strand, within ymxG at 369.394 kb on - strand, within ymxG at 369.394 kb on - strand, within ymxG at 369.418 kb on + strand, within ymxG at 369.440 kb on + strand, within ymxG at 369.463 kb on + strand, within ymxG at 369.463 kb on + strand, within ymxG at 369.471 kb on - strand, within ymxG at 369.473 kb on + strand, within ymxG at 369.481 kb on - strand, within ymxG at 369.481 kb on - strand, within ymxG at 369.481 kb on - strand, within ymxG at 369.498 kb on + strand, within ymxG at 369.563 kb on + strand, within ymxG at 369.580 kb on - strand, within ymxG at 369.610 kb on + strand, within ymxG at 369.660 kb on + strand, within ymxG at 369.668 kb on + strand, within ymxG at 369.676 kb on - strand, within ymxG at 369.695 kb on - strand, within ymxG at 369.695 kb on - strand, within ymxG at 369.754 kb on - strand, within ymxG at 369.820 kb on - strand, within ymxG at 369.820 kb on - strand, within ymxG at 369.840 kb on + strand, within ymxG at 369.876 kb on + strand, within ymxG at 369.925 kb on + strand, within ymxG at 369.954 kb on - strand, within ymxG at 369.956 kb on + strand, within ymxG at 369.958 kb on + strand, within ymxG at 369.984 kb on + strand, within ymxG at 370.002 kb on - strand, within ymxG at 370.011 kb on + strand, within ymxG at 370.098 kb on + strand, within ymxG at 370.098 kb on - strand, within ymxG at 370.103 kb on + strand, within ymxG at 370.103 kb on + strand, within ymxG at 370.103 kb on + strand, within ymxG at 370.103 kb on + strand, within ymxG at 370.111 kb on - strand, within ymxG at 370.111 kb on - strand, within ymxG at 370.178 kb on + strand at 370.180 kb on - strand, within ymxG at 370.185 kb on - strand, within ymxG at 370.186 kb on - strand, within ymxG at 370.228 kb on - strand at 370.308 kb on - strand at 370.354 kb on + strand at 370.360 kb on - strand at 370.360 kb on - strand at 370.367 kb on - strand at 370.396 kb on - strand at 370.410 kb on + strand at 370.418 kb on - strand at 370.483 kb on + strand at 370.501 kb on - strand, within pqqE at 370.513 kb on - strand, within pqqE at 370.523 kb on + strand, within pqqE at 370.523 kb on + strand, within pqqE at 370.523 kb on + strand, within pqqE at 370.523 kb on + strand, within pqqE at 370.523 kb on + strand, within pqqE at 370.523 kb on + strand, within pqqE at 370.523 kb on + strand, within pqqE at 370.531 kb on - strand, within pqqE at 370.531 kb on - strand, within pqqE at 370.531 kb on - strand, within pqqE at 370.540 kb on + strand, within pqqE at 370.544 kb on - strand, within pqqE at 370.561 kb on - strand, within pqqE at 370.577 kb on - strand, within pqqE at 370.584 kb on + strand, within pqqE at 370.654 kb on - strand, within pqqE at 370.697 kb on - strand, within pqqE at 370.710 kb on - strand, within pqqE at 370.719 kb on + strand, within pqqE at 370.719 kb on + strand, within pqqE at 370.727 kb on - strand, within pqqE at 370.733 kb on + strand, within pqqE at 370.747 kb on + strand, within pqqE at 370.759 kb on + strand, within pqqE at 370.766 kb on - strand, within pqqE at 370.849 kb on + strand, within pqqE at 370.895 kb on - strand, within pqqE at 370.895 kb on - strand, within pqqE at 370.897 kb on + strand, within pqqE at 370.903 kb on + strand, within pqqE at 370.909 kb on + strand, within pqqE at 370.910 kb on + strand, within pqqE at 370.915 kb on + strand, within pqqE at 370.917 kb on - strand, within pqqE at 370.926 kb on + strand, within pqqE at 370.930 kb on - strand, within pqqE at 370.980 kb on + strand, within pqqE at 370.986 kb on + strand, within pqqE at 370.988 kb on - strand, within pqqE at 370.994 kb on - strand, within pqqE at 370.996 kb on + strand, within pqqE at 371.005 kb on - strand, within pqqE at 371.038 kb on + strand, within pqqE at 371.038 kb on + strand, within pqqE at 371.142 kb on - strand, within pqqE at 371.181 kb on - strand, within pqqE at 371.216 kb on - strand, within pqqE at 371.250 kb on + strand, within pqqE at 371.260 kb on - strand, within pqqE at 371.308 kb on + strand, within pqqE at 371.389 kb on - strand, within pqqE at 371.400 kb on + strand, within pqqE at 371.411 kb on - strand, within pqqE at 371.418 kb on + strand, within pqqE at 371.421 kb on - strand, within pqqE at 371.421 kb on - strand, within pqqE at 371.426 kb on - strand, within pqqE at 371.441 kb on + strand, within pqqE at 371.441 kb on + strand, within pqqE at 371.442 kb on + strand, within pqqE at 371.450 kb on - strand, within pqqE at 371.452 kb on + strand, within pqqE at 371.457 kb on + strand, within pqqE at 371.464 kb on + strand, within pqqE at 371.464 kb on + strand, within pqqE at 371.469 kb on + strand, within pqqE at 371.472 kb on - strand, within pqqE at 371.486 kb on + strand, within pqqE at 371.505 kb on - strand, within pqqE at 371.509 kb on - strand, within pqqE at 371.511 kb on + strand, within pqqE at 371.512 kb on + strand, within pqqE at 371.512 kb on + strand, within pqqE at 371.520 kb on - strand, within pqqE at 371.541 kb on - strand, within pqqE at 371.560 kb on - strand, within pqqE at 371.560 kb on - strand, within pqqE at 371.589 kb on - strand, within pqqE at 371.596 kb on + strand, within pqqE at 371.628 kb on + strand, within pqqE at 371.628 kb on + strand, within pqqE at 371.628 kb on + strand, within pqqE at 371.631 kb on - strand, within pqqE at 371.636 kb on - strand, within pqqE at 371.636 kb on - strand, within pqqE at 371.636 kb on - strand, within pqqE at 371.636 kb on - strand, within pqqE at 371.636 kb on - strand, within pqqE at 371.636 kb on - strand, within pqqE at 371.638 kb on + strand, within pqqE at 371.638 kb on - strand, within pqqE at 371.643 kb on + strand, within pqqE at 371.663 kb on + strand, within pqqE at 371.678 kb on + strand, within pqqE at 371.730 kb on - strand at 371.730 kb on - strand at 371.730 kb on - strand at 371.808 kb on - strand at 371.826 kb on - strand at 371.831 kb on - strand at 371.846 kb on + strand at 371.847 kb on + strand at 371.847 kb on + strand at 371.847 kb on + strand at 371.855 kb on - strand at 371.894 kb on + strand at 371.895 kb on + strand at 371.902 kb on - strand, within rpoD4 at 371.902 kb on - strand, within rpoD4 at 371.916 kb on + strand, within rpoD4 at 371.973 kb on + strand, within rpoD4 at 371.980 kb on - strand, within rpoD4 at 371.992 kb on - strand, within rpoD4 at 372.017 kb on + strand, within rpoD4 at 372.054 kb on + strand, within rpoD4 at 372.064 kb on + strand, within rpoD4 at 372.072 kb on - strand, within rpoD4 at 372.159 kb on - strand, within rpoD4 at 372.177 kb on + strand at 372.209 kb on - strand at 372.290 kb on + strand at 372.353 kb on + strand at 372.360 kb on + strand at 372.363 kb on - strand at 372.385 kb on + strand at 372.393 kb on - strand at 372.395 kb on + strand at 372.395 kb on + strand at 372.409 kb on + strand at 372.409 kb on + strand at 372.409 kb on + strand at 372.484 kb on + strand at 372.489 kb on + strand at 372.492 kb on - strand at 372.497 kb on - strand at 372.511 kb on + strand at 372.516 kb on - strand at 372.520 kb on - strand at 372.534 kb on + strand at 372.544 kb on + strand at 372.544 kb on + strand at 372.552 kb on - strand at 372.552 kb on - strand at 372.552 kb on - strand at 372.562 kb on - strand at 372.642 kb on + strand, within ycf63 at 372.642 kb on + strand, within ycf63 at 372.676 kb on - strand, within ycf63 at 372.680 kb on + strand, within ycf63 at 372.687 kb on + strand, within ycf63 at 372.695 kb on - strand, within ycf63 at 372.707 kb on - strand, within ycf63 at 372.708 kb on - strand, within ycf63 at 372.717 kb on - strand, within ycf63 at 372.732 kb on - strand, within ycf63 at 372.796 kb on - strand, within ycf63 at 372.802 kb on + strand, within ycf63
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.0078125 mg/ml remove 369,359 + ymxG Synpcc7942_0375 0.30 -0.3 369,372 - ymxG Synpcc7942_0375 0.31 -0.3 369,377 - ymxG Synpcc7942_0375 0.32 +0.8 369,382 - ymxG Synpcc7942_0375 0.32 -1.3 369,384 - ymxG Synpcc7942_0375 0.32 -2.6 369,394 - ymxG Synpcc7942_0375 0.33 +2.0 369,394 - ymxG Synpcc7942_0375 0.33 -0.3 369,418 + ymxG Synpcc7942_0375 0.35 -0.6 369,440 + ymxG Synpcc7942_0375 0.36 +2.1 369,463 + ymxG Synpcc7942_0375 0.38 -2.9 369,463 + ymxG Synpcc7942_0375 0.38 -1.3 369,471 - ymxG Synpcc7942_0375 0.38 +2.2 369,473 + ymxG Synpcc7942_0375 0.38 -2.9 369,481 - ymxG Synpcc7942_0375 0.39 +1.7 369,481 - ymxG Synpcc7942_0375 0.39 +2.5 369,481 - ymxG Synpcc7942_0375 0.39 -1.3 369,498 + ymxG Synpcc7942_0375 0.40 +0.7 369,563 + ymxG Synpcc7942_0375 0.45 -0.9 369,580 - ymxG Synpcc7942_0375 0.46 -1.3 369,610 + ymxG Synpcc7942_0375 0.48 -1.8 369,660 + ymxG Synpcc7942_0375 0.52 +1.1 369,668 + ymxG Synpcc7942_0375 0.52 +1.8 369,676 - ymxG Synpcc7942_0375 0.53 -3.3 369,695 - ymxG Synpcc7942_0375 0.54 +2.0 369,695 - ymxG Synpcc7942_0375 0.54 -1.3 369,754 - ymxG Synpcc7942_0375 0.58 +2.1 369,820 - ymxG Synpcc7942_0375 0.63 -0.3 369,820 - ymxG Synpcc7942_0375 0.63 +2.5 369,840 + ymxG Synpcc7942_0375 0.64 -2.9 369,876 + ymxG Synpcc7942_0375 0.67 +0.7 369,925 + ymxG Synpcc7942_0375 0.70 +1.1 369,954 - ymxG Synpcc7942_0375 0.72 +0.7 369,956 + ymxG Synpcc7942_0375 0.73 +1.8 369,958 + ymxG Synpcc7942_0375 0.73 -2.6 369,984 + ymxG Synpcc7942_0375 0.75 -1.3 370,002 - ymxG Synpcc7942_0375 0.76 -0.3 370,011 + ymxG Synpcc7942_0375 0.76 -1.3 370,098 + ymxG Synpcc7942_0375 0.83 -1.3 370,098 - ymxG Synpcc7942_0375 0.83 -0.3 370,103 + ymxG Synpcc7942_0375 0.83 +3.2 370,103 + ymxG Synpcc7942_0375 0.83 +3.0 370,103 + ymxG Synpcc7942_0375 0.83 +1.1 370,103 + ymxG Synpcc7942_0375 0.83 +3.4 370,111 - ymxG Synpcc7942_0375 0.83 +1.5 370,111 - ymxG Synpcc7942_0375 0.83 -0.3 370,178 + -0.3 370,180 - ymxG Synpcc7942_0375 0.88 +0.4 370,185 - ymxG Synpcc7942_0375 0.89 +1.4 370,186 - ymxG Synpcc7942_0375 0.89 +2.0 370,228 - -0.3 370,308 - -0.3 370,354 + -0.3 370,360 - -1.9 370,360 - +1.7 370,367 - +0.4 370,396 - +0.2 370,410 + +2.5 370,418 - +0.6 370,483 + +2.5 370,501 - pqqE Synpcc7942_0376 0.10 +1.2 370,513 - pqqE Synpcc7942_0376 0.11 +4.6 370,523 + pqqE Synpcc7942_0376 0.12 +0.1 370,523 + pqqE Synpcc7942_0376 0.12 +2.5 370,523 + pqqE Synpcc7942_0376 0.12 +1.1 370,523 + pqqE Synpcc7942_0376 0.12 +0.4 370,523 + pqqE Synpcc7942_0376 0.12 -1.3 370,523 + pqqE Synpcc7942_0376 0.12 +2.8 370,523 + pqqE Synpcc7942_0376 0.12 -1.3 370,531 - pqqE Synpcc7942_0376 0.12 +2.4 370,531 - pqqE Synpcc7942_0376 0.12 +3.6 370,531 - pqqE Synpcc7942_0376 0.12 +2.6 370,540 + pqqE Synpcc7942_0376 0.13 +1.4 370,544 - pqqE Synpcc7942_0376 0.13 +0.7 370,561 - pqqE Synpcc7942_0376 0.14 +4.4 370,577 - pqqE Synpcc7942_0376 0.15 +1.8 370,584 + pqqE Synpcc7942_0376 0.16 -0.3 370,654 - pqqE Synpcc7942_0376 0.20 +1.6 370,697 - pqqE Synpcc7942_0376 0.23 +0.7 370,710 - pqqE Synpcc7942_0376 0.24 +0.7 370,719 + pqqE Synpcc7942_0376 0.25 -2.3 370,719 + pqqE Synpcc7942_0376 0.25 +0.5 370,727 - pqqE Synpcc7942_0376 0.25 +0.1 370,733 + pqqE Synpcc7942_0376 0.26 -1.9 370,747 + pqqE Synpcc7942_0376 0.27 +1.3 370,759 + pqqE Synpcc7942_0376 0.27 +2.4 370,766 - pqqE Synpcc7942_0376 0.28 +3.1 370,849 + pqqE Synpcc7942_0376 0.33 -3.1 370,895 - pqqE Synpcc7942_0376 0.36 +2.8 370,895 - pqqE Synpcc7942_0376 0.36 -1.0 370,897 + pqqE Synpcc7942_0376 0.36 +3.0 370,903 + pqqE Synpcc7942_0376 0.37 +2.7 370,909 + pqqE Synpcc7942_0376 0.37 -2.3 370,910 + pqqE Synpcc7942_0376 0.37 +0.7 370,915 + pqqE Synpcc7942_0376 0.38 +0.8 370,917 - pqqE Synpcc7942_0376 0.38 +0.4 370,926 + pqqE Synpcc7942_0376 0.38 +1.3 370,930 - pqqE Synpcc7942_0376 0.39 -0.3 370,980 + pqqE Synpcc7942_0376 0.42 +1.9 370,986 + pqqE Synpcc7942_0376 0.42 +2.5 370,988 - pqqE Synpcc7942_0376 0.42 +2.0 370,994 - pqqE Synpcc7942_0376 0.43 +1.1 370,996 + pqqE Synpcc7942_0376 0.43 -1.3 371,005 - pqqE Synpcc7942_0376 0.43 -1.9 371,038 + pqqE Synpcc7942_0376 0.46 -2.3 371,038 + pqqE Synpcc7942_0376 0.46 -0.3 371,142 - pqqE Synpcc7942_0376 0.52 +1.3 371,181 - pqqE Synpcc7942_0376 0.55 -2.1 371,216 - pqqE Synpcc7942_0376 0.57 -0.3 371,250 + pqqE Synpcc7942_0376 0.60 -1.5 371,260 - pqqE Synpcc7942_0376 0.60 -1.3 371,308 + pqqE Synpcc7942_0376 0.63 +2.4 371,389 - pqqE Synpcc7942_0376 0.69 -0.3 371,400 + pqqE Synpcc7942_0376 0.69 -1.9 371,411 - pqqE Synpcc7942_0376 0.70 +1.2 371,418 + pqqE Synpcc7942_0376 0.71 +2.3 371,421 - pqqE Synpcc7942_0376 0.71 -0.3 371,421 - pqqE Synpcc7942_0376 0.71 -0.1 371,426 - pqqE Synpcc7942_0376 0.71 -2.3 371,441 + pqqE Synpcc7942_0376 0.72 +3.1 371,441 + pqqE Synpcc7942_0376 0.72 -0.3 371,442 + pqqE Synpcc7942_0376 0.72 -0.8 371,450 - pqqE Synpcc7942_0376 0.73 -1.3 371,452 + pqqE Synpcc7942_0376 0.73 +1.8 371,457 + pqqE Synpcc7942_0376 0.73 +0.4 371,464 + pqqE Synpcc7942_0376 0.74 +0.2 371,464 + pqqE Synpcc7942_0376 0.74 +2.9 371,469 + pqqE Synpcc7942_0376 0.74 -0.3 371,472 - pqqE Synpcc7942_0376 0.74 -0.3 371,486 + pqqE Synpcc7942_0376 0.75 +1.5 371,505 - pqqE Synpcc7942_0376 0.76 +2.9 371,509 - pqqE Synpcc7942_0376 0.76 +1.2 371,511 + pqqE Synpcc7942_0376 0.77 -0.3 371,512 + pqqE Synpcc7942_0376 0.77 -1.3 371,512 + pqqE Synpcc7942_0376 0.77 -0.3 371,520 - pqqE Synpcc7942_0376 0.77 +1.0 371,541 - pqqE Synpcc7942_0376 0.79 +0.3 371,560 - pqqE Synpcc7942_0376 0.80 +2.9 371,560 - pqqE Synpcc7942_0376 0.80 +2.7 371,589 - pqqE Synpcc7942_0376 0.82 -0.3 371,596 + pqqE Synpcc7942_0376 0.82 +2.2 371,628 + pqqE Synpcc7942_0376 0.84 +2.0 371,628 + pqqE Synpcc7942_0376 0.84 +1.2 371,628 + pqqE Synpcc7942_0376 0.84 -0.5 371,631 - pqqE Synpcc7942_0376 0.84 +0.7 371,636 - pqqE Synpcc7942_0376 0.85 +1.7 371,636 - pqqE Synpcc7942_0376 0.85 +0.0 371,636 - pqqE Synpcc7942_0376 0.85 -0.3 371,636 - pqqE Synpcc7942_0376 0.85 -0.3 371,636 - pqqE Synpcc7942_0376 0.85 -1.3 371,636 - pqqE Synpcc7942_0376 0.85 -2.3 371,638 + pqqE Synpcc7942_0376 0.85 +1.3 371,638 - pqqE Synpcc7942_0376 0.85 +2.7 371,643 + pqqE Synpcc7942_0376 0.85 -1.9 371,663 + pqqE Synpcc7942_0376 0.87 +1.7 371,678 + pqqE Synpcc7942_0376 0.88 +0.7 371,730 - +1.0 371,730 - +0.7 371,730 - +1.7 371,808 - +2.2 371,826 - +1.0 371,831 - +2.2 371,846 + -0.3 371,847 + +2.0 371,847 + +1.0 371,847 + +1.6 371,855 - +1.3 371,894 + +2.7 371,895 + -1.9 371,902 - rpoD4 Synpcc7942_0377 0.10 +1.1 371,902 - rpoD4 Synpcc7942_0377 0.10 +0.7 371,916 + rpoD4 Synpcc7942_0377 0.14 +0.8 371,973 + rpoD4 Synpcc7942_0377 0.31 +3.1 371,980 - rpoD4 Synpcc7942_0377 0.33 +0.7 371,992 - rpoD4 Synpcc7942_0377 0.37 +2.7 372,017 + rpoD4 Synpcc7942_0377 0.44 +3.6 372,054 + rpoD4 Synpcc7942_0377 0.55 +1.5 372,064 + rpoD4 Synpcc7942_0377 0.58 +2.7 372,072 - rpoD4 Synpcc7942_0377 0.60 +1.5 372,159 - rpoD4 Synpcc7942_0377 0.86 +2.0 372,177 + +2.7 372,209 - -2.6 372,290 + +1.7 372,353 + +1.0 372,360 + +2.3 372,363 - +0.7 372,385 + +0.0 372,393 - +3.7 372,395 + -0.3 372,395 + +2.6 372,409 + +0.7 372,409 + +3.3 372,409 + -0.3 372,484 + -0.3 372,489 + -1.3 372,492 - -1.3 372,497 - -2.3 372,511 + +2.4 372,516 - +1.0 372,520 - -0.3 372,534 + +0.5 372,544 + +0.7 372,544 + +1.8 372,552 - -2.9 372,552 - +1.6 372,552 - +1.9 372,562 - +1.9 372,642 + ycf63 Synpcc7942_0378 0.14 -1.3 372,642 + ycf63 Synpcc7942_0378 0.14 -1.3 372,676 - ycf63 Synpcc7942_0378 0.18 -0.6 372,680 + ycf63 Synpcc7942_0378 0.19 -4.6 372,687 + ycf63 Synpcc7942_0378 0.19 -0.3 372,695 - ycf63 Synpcc7942_0378 0.21 -2.3 372,707 - ycf63 Synpcc7942_0378 0.22 -1.9 372,708 - ycf63 Synpcc7942_0378 0.22 -2.6 372,717 - ycf63 Synpcc7942_0378 0.23 -1.3 372,732 - ycf63 Synpcc7942_0378 0.25 -0.8 372,796 - ycf63 Synpcc7942_0378 0.33 +0.9 372,802 + ycf63 Synpcc7942_0378 0.34 +0.1
Or see this region's nucleotide sequence