Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0336

Experiment: Nalidixic 0.0078125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntatpF and atpD are separated by 9 nucleotidesatpD and atpA are separated by 46 nucleotidesatpA and atpC are separated by 62 nucleotides Synpcc7942_0334: atpF - F0F1 ATP synthase subunit B, at 329,764 to 330,279 atpF Synpcc7942_0335: atpD - F0F1 ATP synthase subunit delta, at 330,289 to 330,831 atpD Synpcc7942_0336: atpA - F0F1 ATP synthase subunit alpha, at 330,878 to 332,395 atpA Synpcc7942_0337: atpC - F0F1 ATP synthase subunit gamma, at 332,458 to 333,408 atpC Position (kb) 330 331 332 333Strain fitness (log2 ratio) -1 0 1at 332.462 kb on - strandat 332.462 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.0078125 mg/ml
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332,462 - +0.9
332,462 - -1.2

Or see this region's nucleotide sequence