Experiment: Nalidixic 0.0078125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dfp and Synpcc7942_0293 overlap by 4 nucleotides Synpcc7942_0293 and psbO are separated by 298 nucleotides psbO and sat are separated by 189 nucleotides
Synpcc7942_0292: dfp - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase, at 288,534 to 289,760
dfp
Synpcc7942_0293: Synpcc7942_0293 - hypothetical protein, at 289,757 to 290,095
_0293
Synpcc7942_0294: psbO - photosystem II manganese-stabilizing polypeptide, at 290,394 to 291,227
psbO
Synpcc7942_0295: sat - sulfate adenylyltransferase, at 291,417 to 292,604
sat
Position (kb) 290
291
292 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 289.837 kb on - strand, within Synpcc7942_0293 at 289.848 kb on - strand, within Synpcc7942_0293 at 289.848 kb on - strand, within Synpcc7942_0293 at 289.853 kb on - strand, within Synpcc7942_0293 at 289.858 kb on - strand, within Synpcc7942_0293 at 289.866 kb on + strand, within Synpcc7942_0293 at 289.885 kb on - strand, within Synpcc7942_0293 at 289.886 kb on + strand, within Synpcc7942_0293 at 289.886 kb on + strand, within Synpcc7942_0293 at 289.889 kb on + strand, within Synpcc7942_0293 at 289.894 kb on - strand, within Synpcc7942_0293 at 289.910 kb on + strand, within Synpcc7942_0293 at 289.935 kb on + strand, within Synpcc7942_0293 at 289.944 kb on + strand, within Synpcc7942_0293 at 289.984 kb on + strand, within Synpcc7942_0293 at 289.984 kb on - strand, within Synpcc7942_0293 at 290.028 kb on + strand, within Synpcc7942_0293 at 290.095 kb on + strand at 290.103 kb on - strand at 290.103 kb on - strand at 290.143 kb on + strand at 290.154 kb on + strand at 290.154 kb on + strand at 290.162 kb on - strand at 290.162 kb on - strand at 290.169 kb on + strand at 290.172 kb on - strand at 290.177 kb on - strand at 290.517 kb on + strand, within psbO at 290.871 kb on - strand, within psbO at 290.989 kb on - strand, within psbO at 291.223 kb on - strand at 291.254 kb on - strand at 291.260 kb on + strand at 291.266 kb on + strand at 291.362 kb on - strand at 291.402 kb on + strand at 291.451 kb on - strand at 292.079 kb on + strand, within sat at 292.089 kb on + strand, within sat
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.0078125 mg/ml remove 289,837 - Synpcc7942_0293 0.24 +0.8 289,848 - Synpcc7942_0293 0.27 -1.4 289,848 - Synpcc7942_0293 0.27 +0.3 289,853 - Synpcc7942_0293 0.28 +2.4 289,858 - Synpcc7942_0293 0.30 +2.4 289,866 + Synpcc7942_0293 0.32 +1.2 289,885 - Synpcc7942_0293 0.38 +3.5 289,886 + Synpcc7942_0293 0.38 +1.9 289,886 + Synpcc7942_0293 0.38 +1.7 289,889 + Synpcc7942_0293 0.39 +2.8 289,894 - Synpcc7942_0293 0.40 -0.2 289,910 + Synpcc7942_0293 0.45 -1.0 289,935 + Synpcc7942_0293 0.53 -1.8 289,944 + Synpcc7942_0293 0.55 +3.0 289,984 + Synpcc7942_0293 0.67 -1.2 289,984 - Synpcc7942_0293 0.67 +1.7 290,028 + Synpcc7942_0293 0.80 +2.4 290,095 + +1.6 290,103 - +3.6 290,103 - +1.9 290,143 + +3.2 290,154 + +1.2 290,154 + +0.9 290,162 - -0.2 290,162 - +3.2 290,169 + +1.6 290,172 - +3.2 290,177 - +2.6 290,517 + psbO Synpcc7942_0294 0.15 -1.2 290,871 - psbO Synpcc7942_0294 0.57 -1.2 290,989 - psbO Synpcc7942_0294 0.71 -1.2 291,223 - -0.2 291,254 - -2.4 291,260 + -0.6 291,266 + +2.1 291,362 - +3.5 291,402 + +1.9 291,451 - +1.4 292,079 + sat Synpcc7942_0295 0.56 -0.2 292,089 + sat Synpcc7942_0295 0.57 -0.2
Or see this region's nucleotide sequence