Experiment: Nalidixic 0.0078125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0217 and tRNApro are separated by 55 nucleotides tRNApro and Synpcc7942_0218 are separated by 23 nucleotides Synpcc7942_0218 and Synpcc7942_0219 are separated by 124 nucleotides Synpcc7942_0219 and minD are separated by 2 nucleotides
Synpcc7942_0217: Synpcc7942_0217 - phosphatase-like, at 219,113 to 219,871
_0217
Synpcc7942_R0029: tRNApro - tRNA-Pro, at 219,927 to 220,000
tRNApro
Synpcc7942_0218: Synpcc7942_0218 - hypothetical protein, at 220,024 to 220,191
_0218
Synpcc7942_0219: Synpcc7942_0219 - hypothetical protein, at 220,316 to 220,636
_0219
Synpcc7942_0220: minD - probable cell division inhibitor MinD, at 220,639 to 221,397
minD
Position (kb) 220
221 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 219.105 kb on - strand at 219.105 kb on - strand at 219.164 kb on + strand at 219.195 kb on - strand, within Synpcc7942_0217 at 219.214 kb on + strand, within Synpcc7942_0217 at 219.221 kb on + strand, within Synpcc7942_0217 at 219.221 kb on + strand, within Synpcc7942_0217 at 219.221 kb on + strand, within Synpcc7942_0217 at 219.224 kb on - strand, within Synpcc7942_0217 at 219.229 kb on - strand, within Synpcc7942_0217 at 219.229 kb on - strand, within Synpcc7942_0217 at 219.229 kb on - strand, within Synpcc7942_0217 at 219.229 kb on - strand, within Synpcc7942_0217 at 219.254 kb on + strand, within Synpcc7942_0217 at 219.267 kb on - strand, within Synpcc7942_0217 at 219.362 kb on + strand, within Synpcc7942_0217 at 219.369 kb on + strand, within Synpcc7942_0217 at 219.369 kb on + strand, within Synpcc7942_0217 at 219.369 kb on + strand, within Synpcc7942_0217 at 219.370 kb on - strand, within Synpcc7942_0217 at 219.377 kb on - strand, within Synpcc7942_0217 at 219.412 kb on + strand, within Synpcc7942_0217 at 219.430 kb on + strand, within Synpcc7942_0217 at 219.433 kb on - strand, within Synpcc7942_0217 at 219.444 kb on + strand, within Synpcc7942_0217 at 219.444 kb on + strand, within Synpcc7942_0217 at 219.452 kb on - strand, within Synpcc7942_0217 at 219.500 kb on - strand, within Synpcc7942_0217 at 219.500 kb on - strand, within Synpcc7942_0217 at 219.502 kb on + strand, within Synpcc7942_0217 at 219.502 kb on + strand, within Synpcc7942_0217 at 219.505 kb on - strand, within Synpcc7942_0217 at 219.509 kb on + strand, within Synpcc7942_0217 at 219.510 kb on - strand, within Synpcc7942_0217 at 219.525 kb on + strand, within Synpcc7942_0217 at 219.552 kb on + strand, within Synpcc7942_0217 at 219.558 kb on + strand, within Synpcc7942_0217 at 219.566 kb on - strand, within Synpcc7942_0217 at 219.583 kb on + strand, within Synpcc7942_0217 at 219.602 kb on - strand, within Synpcc7942_0217 at 219.613 kb on + strand, within Synpcc7942_0217 at 219.641 kb on + strand, within Synpcc7942_0217 at 219.647 kb on + strand at 219.649 kb on - strand, within Synpcc7942_0217 at 219.681 kb on + strand, within Synpcc7942_0217 at 219.688 kb on - strand, within Synpcc7942_0217 at 219.692 kb on + strand, within Synpcc7942_0217 at 219.694 kb on - strand, within Synpcc7942_0217 at 219.698 kb on + strand, within Synpcc7942_0217 at 219.733 kb on + strand, within Synpcc7942_0217 at 219.733 kb on + strand, within Synpcc7942_0217 at 219.733 kb on + strand, within Synpcc7942_0217 at 219.733 kb on + strand, within Synpcc7942_0217 at 219.736 kb on - strand, within Synpcc7942_0217 at 219.741 kb on - strand at 219.741 kb on - strand, within Synpcc7942_0217 at 219.743 kb on + strand, within Synpcc7942_0217 at 219.755 kb on + strand, within Synpcc7942_0217 at 219.755 kb on + strand, within Synpcc7942_0217 at 219.755 kb on + strand, within Synpcc7942_0217 at 219.758 kb on - strand, within Synpcc7942_0217 at 219.758 kb on - strand, within Synpcc7942_0217 at 219.760 kb on + strand, within Synpcc7942_0217 at 219.760 kb on + strand, within Synpcc7942_0217 at 219.760 kb on + strand, within Synpcc7942_0217 at 219.760 kb on + strand, within Synpcc7942_0217 at 219.763 kb on - strand, within Synpcc7942_0217 at 219.763 kb on - strand, within Synpcc7942_0217 at 219.795 kb on + strand, within Synpcc7942_0217 at 219.795 kb on + strand, within Synpcc7942_0217 at 219.804 kb on - strand at 219.850 kb on - strand at 219.866 kb on + strand at 219.874 kb on - strand at 219.899 kb on - strand at 219.899 kb on - strand at 220.021 kb on + strand at 220.030 kb on - strand at 220.051 kb on - strand, within Synpcc7942_0218 at 220.051 kb on - strand, within Synpcc7942_0218 at 220.188 kb on - strand at 220.222 kb on + strand at 220.230 kb on - strand at 220.246 kb on + strand at 220.251 kb on + strand at 220.259 kb on - strand at 220.314 kb on + strand at 220.314 kb on + strand at 220.319 kb on + strand at 220.319 kb on + strand at 220.319 kb on + strand at 220.319 kb on + strand at 220.319 kb on + strand at 220.319 kb on + strand at 220.322 kb on - strand at 220.327 kb on - strand at 220.327 kb on - strand at 220.334 kb on - strand at 220.346 kb on - strand at 220.372 kb on + strand, within Synpcc7942_0219 at 220.374 kb on - strand, within Synpcc7942_0219 at 220.374 kb on - strand, within Synpcc7942_0219 at 220.377 kb on + strand, within Synpcc7942_0219 at 220.463 kb on + strand, within Synpcc7942_0219 at 220.468 kb on + strand, within Synpcc7942_0219 at 220.484 kb on - strand, within Synpcc7942_0219 at 220.490 kb on - strand, within Synpcc7942_0219 at 220.542 kb on - strand, within Synpcc7942_0219 at 220.548 kb on - strand, within Synpcc7942_0219 at 220.563 kb on - strand, within Synpcc7942_0219 at 220.577 kb on + strand, within Synpcc7942_0219 at 220.611 kb on - strand at 220.631 kb on + strand at 220.631 kb on + strand at 220.631 kb on + strand at 220.631 kb on - strand at 220.631 kb on - strand at 220.639 kb on - strand at 220.639 kb on - strand at 220.639 kb on - strand at 220.674 kb on + strand at 220.674 kb on + strand at 220.682 kb on - strand at 220.682 kb on - strand at 220.692 kb on - strand at 220.706 kb on + strand at 220.714 kb on - strand at 220.719 kb on - strand, within minD at 220.732 kb on + strand, within minD at 220.761 kb on - strand, within minD at 220.786 kb on - strand, within minD at 220.795 kb on - strand, within minD at 220.814 kb on - strand, within minD at 220.881 kb on + strand, within minD at 220.903 kb on + strand, within minD at 220.943 kb on - strand, within minD at 221.035 kb on + strand, within minD at 221.056 kb on - strand, within minD at 221.066 kb on + strand, within minD at 221.074 kb on - strand, within minD at 221.122 kb on - strand, within minD at 221.158 kb on - strand, within minD at 221.159 kb on + strand, within minD at 221.175 kb on - strand, within minD
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.0078125 mg/ml remove 219,105 - +2.5 219,105 - +1.0 219,164 + +2.6 219,195 - Synpcc7942_0217 0.11 +0.0 219,214 + Synpcc7942_0217 0.13 -2.3 219,221 + Synpcc7942_0217 0.14 +3.1 219,221 + Synpcc7942_0217 0.14 +2.4 219,221 + Synpcc7942_0217 0.14 +0.7 219,224 - Synpcc7942_0217 0.15 -0.9 219,229 - Synpcc7942_0217 0.15 +0.9 219,229 - Synpcc7942_0217 0.15 +2.4 219,229 - Synpcc7942_0217 0.15 +2.3 219,229 - Synpcc7942_0217 0.15 +1.5 219,254 + Synpcc7942_0217 0.19 +0.9 219,267 - Synpcc7942_0217 0.20 +1.9 219,362 + Synpcc7942_0217 0.33 -0.3 219,369 + Synpcc7942_0217 0.34 +0.4 219,369 + Synpcc7942_0217 0.34 +0.5 219,369 + Synpcc7942_0217 0.34 -0.3 219,370 - Synpcc7942_0217 0.34 -0.3 219,377 - Synpcc7942_0217 0.35 +2.8 219,412 + Synpcc7942_0217 0.39 +0.3 219,430 + Synpcc7942_0217 0.42 -0.7 219,433 - Synpcc7942_0217 0.42 +1.0 219,444 + Synpcc7942_0217 0.44 +1.7 219,444 + Synpcc7942_0217 0.44 +0.4 219,452 - Synpcc7942_0217 0.45 +1.7 219,500 - Synpcc7942_0217 0.51 +2.7 219,500 - Synpcc7942_0217 0.51 -3.3 219,502 + Synpcc7942_0217 0.51 +0.9 219,502 + Synpcc7942_0217 0.51 -1.3 219,505 - Synpcc7942_0217 0.52 +1.5 219,509 + Synpcc7942_0217 0.52 -2.3 219,510 - Synpcc7942_0217 0.52 +1.1 219,525 + Synpcc7942_0217 0.54 +1.2 219,552 + Synpcc7942_0217 0.58 -0.6 219,558 + Synpcc7942_0217 0.59 +3.2 219,566 - Synpcc7942_0217 0.60 +2.0 219,583 + Synpcc7942_0217 0.62 +2.6 219,602 - Synpcc7942_0217 0.64 +1.2 219,613 + Synpcc7942_0217 0.66 +1.3 219,641 + Synpcc7942_0217 0.70 +1.3 219,647 + +1.3 219,649 - Synpcc7942_0217 0.71 +2.8 219,681 + Synpcc7942_0217 0.75 +1.7 219,688 - Synpcc7942_0217 0.76 +2.9 219,692 + Synpcc7942_0217 0.76 +3.4 219,694 - Synpcc7942_0217 0.77 +0.7 219,698 + Synpcc7942_0217 0.77 +0.0 219,733 + Synpcc7942_0217 0.82 +1.1 219,733 + Synpcc7942_0217 0.82 +3.9 219,733 + Synpcc7942_0217 0.82 -1.3 219,733 + Synpcc7942_0217 0.82 +2.4 219,736 - Synpcc7942_0217 0.82 +1.9 219,741 - -1.3 219,741 - Synpcc7942_0217 0.83 -0.3 219,743 + Synpcc7942_0217 0.83 +2.3 219,755 + Synpcc7942_0217 0.85 +1.8 219,755 + Synpcc7942_0217 0.85 -1.3 219,755 + Synpcc7942_0217 0.85 +3.5 219,758 - Synpcc7942_0217 0.85 -2.5 219,758 - Synpcc7942_0217 0.85 +0.7 219,760 + Synpcc7942_0217 0.85 +3.5 219,760 + Synpcc7942_0217 0.85 +2.9 219,760 + Synpcc7942_0217 0.85 +2.4 219,760 + Synpcc7942_0217 0.85 +1.3 219,763 - Synpcc7942_0217 0.86 +4.9 219,763 - Synpcc7942_0217 0.86 +0.1 219,795 + Synpcc7942_0217 0.90 +0.5 219,795 + Synpcc7942_0217 0.90 +2.0 219,804 - +1.5 219,850 - -1.3 219,866 + +2.7 219,874 - -1.3 219,899 - +0.7 219,899 - +0.3 220,021 + -1.3 220,030 - -0.3 220,051 - Synpcc7942_0218 0.16 -1.9 220,051 - Synpcc7942_0218 0.16 -1.0 220,188 - +2.3 220,222 + -0.1 220,230 - +1.9 220,246 + +1.2 220,251 + +1.7 220,259 - +2.2 220,314 + +1.6 220,314 + +2.0 220,319 + +1.7 220,319 + -0.3 220,319 + +1.8 220,319 + +2.0 220,319 + +2.9 220,319 + +2.3 220,322 - +1.7 220,327 - +1.0 220,327 - -0.8 220,334 - +1.7 220,346 - +2.4 220,372 + Synpcc7942_0219 0.17 -1.3 220,374 - Synpcc7942_0219 0.18 -0.4 220,374 - Synpcc7942_0219 0.18 +2.1 220,377 + Synpcc7942_0219 0.19 +0.8 220,463 + Synpcc7942_0219 0.46 +2.1 220,468 + Synpcc7942_0219 0.47 +2.0 220,484 - Synpcc7942_0219 0.52 -1.3 220,490 - Synpcc7942_0219 0.54 -1.3 220,542 - Synpcc7942_0219 0.70 -0.3 220,548 - Synpcc7942_0219 0.72 +3.6 220,563 - Synpcc7942_0219 0.77 +0.7 220,577 + Synpcc7942_0219 0.81 -0.3 220,611 - -1.3 220,631 + -0.3 220,631 + -0.3 220,631 + -1.3 220,631 - +2.9 220,631 - +0.7 220,639 - -0.3 220,639 - +6.1 220,639 - -1.3 220,674 + -1.3 220,674 + -1.3 220,682 - +0.8 220,682 - -0.3 220,692 - +1.3 220,706 + +1.8 220,714 - +1.4 220,719 - minD Synpcc7942_0220 0.11 -0.3 220,732 + minD Synpcc7942_0220 0.12 -2.9 220,761 - minD Synpcc7942_0220 0.16 +1.2 220,786 - minD Synpcc7942_0220 0.19 +3.3 220,795 - minD Synpcc7942_0220 0.21 +2.2 220,814 - minD Synpcc7942_0220 0.23 +3.0 220,881 + minD Synpcc7942_0220 0.32 -1.3 220,903 + minD Synpcc7942_0220 0.35 -0.3 220,943 - minD Synpcc7942_0220 0.40 +1.0 221,035 + minD Synpcc7942_0220 0.52 +3.0 221,056 - minD Synpcc7942_0220 0.55 +1.3 221,066 + minD Synpcc7942_0220 0.56 +0.3 221,074 - minD Synpcc7942_0220 0.57 +3.0 221,122 - minD Synpcc7942_0220 0.64 +0.9 221,158 - minD Synpcc7942_0220 0.68 +2.3 221,159 + minD Synpcc7942_0220 0.69 -0.5 221,175 - minD Synpcc7942_0220 0.71 -2.6
Or see this region's nucleotide sequence