Experiment: Nalidixic 0.0078125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0153 and Synpcc7942_0154 are separated by 32 nucleotides Synpcc7942_0154 and Synpcc7942_0155 overlap by 4 nucleotides Synpcc7942_0155 and Synpcc7942_0156 are separated by 25 nucleotides Synpcc7942_0156 and Synpcc7942_0157 are separated by 200 nucleotides
Synpcc7942_0153: Synpcc7942_0153 - hypothetical protein, at 156,026 to 156,307
_0153
Synpcc7942_0154: Synpcc7942_0154 - hypothetical protein, at 156,340 to 156,957
_0154
Synpcc7942_0155: Synpcc7942_0155 - hypothetical protein, at 156,954 to 157,184
_0155
Synpcc7942_0156: Synpcc7942_0156 - phosphoglucomutase, at 157,210 to 158,841
_0156
Synpcc7942_0157: Synpcc7942_0157 - hypothetical protein, at 159,042 to 159,560
_0157
Position (kb) 157
158
159 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 156.332 kb on - strand at 156.366 kb on - strand at 156.366 kb on - strand at 156.366 kb on - strand at 156.366 kb on - strand at 156.410 kb on + strand, within Synpcc7942_0154 at 156.431 kb on + strand, within Synpcc7942_0154 at 156.431 kb on + strand, within Synpcc7942_0154 at 156.434 kb on - strand, within Synpcc7942_0154 at 156.439 kb on - strand, within Synpcc7942_0154 at 156.439 kb on - strand, within Synpcc7942_0154 at 156.439 kb on - strand, within Synpcc7942_0154 at 156.449 kb on + strand, within Synpcc7942_0154 at 156.449 kb on + strand, within Synpcc7942_0154 at 156.470 kb on + strand, within Synpcc7942_0154 at 156.512 kb on - strand, within Synpcc7942_0154 at 156.512 kb on - strand, within Synpcc7942_0154 at 156.525 kb on + strand, within Synpcc7942_0154 at 156.525 kb on + strand, within Synpcc7942_0154 at 156.539 kb on + strand, within Synpcc7942_0154 at 156.539 kb on + strand, within Synpcc7942_0154 at 156.539 kb on + strand, within Synpcc7942_0154 at 156.549 kb on + strand, within Synpcc7942_0154 at 156.569 kb on - strand, within Synpcc7942_0154 at 156.571 kb on - strand, within Synpcc7942_0154 at 156.571 kb on - strand, within Synpcc7942_0154 at 156.572 kb on + strand, within Synpcc7942_0154 at 156.576 kb on - strand, within Synpcc7942_0154 at 156.590 kb on - strand, within Synpcc7942_0154 at 156.599 kb on + strand, within Synpcc7942_0154 at 156.599 kb on + strand, within Synpcc7942_0154 at 156.599 kb on + strand, within Synpcc7942_0154 at 156.607 kb on - strand, within Synpcc7942_0154 at 156.629 kb on + strand, within Synpcc7942_0154 at 156.637 kb on - strand, within Synpcc7942_0154 at 156.637 kb on - strand, within Synpcc7942_0154 at 156.657 kb on - strand, within Synpcc7942_0154 at 156.659 kb on - strand, within Synpcc7942_0154 at 156.661 kb on + strand, within Synpcc7942_0154 at 156.692 kb on - strand, within Synpcc7942_0154 at 156.719 kb on + strand, within Synpcc7942_0154 at 156.758 kb on - strand, within Synpcc7942_0154 at 156.782 kb on - strand, within Synpcc7942_0154 at 156.851 kb on - strand, within Synpcc7942_0154 at 156.857 kb on + strand, within Synpcc7942_0154 at 156.867 kb on + strand, within Synpcc7942_0154 at 156.878 kb on + strand, within Synpcc7942_0154 at 156.878 kb on + strand, within Synpcc7942_0154 at 156.904 kb on + strand at 156.933 kb on + strand at 156.933 kb on + strand at 156.933 kb on + strand at 156.941 kb on - strand at 156.941 kb on - strand at 156.941 kb on - strand at 156.963 kb on + strand at 156.976 kb on - strand at 156.989 kb on - strand, within Synpcc7942_0155 at 156.992 kb on + strand, within Synpcc7942_0155 at 157.004 kb on + strand, within Synpcc7942_0155 at 157.020 kb on - strand, within Synpcc7942_0155 at 157.087 kb on - strand, within Synpcc7942_0155 at 157.109 kb on + strand, within Synpcc7942_0155 at 157.109 kb on + strand, within Synpcc7942_0155 at 157.117 kb on - strand, within Synpcc7942_0155 at 157.159 kb on - strand, within Synpcc7942_0155 at 157.178 kb on + strand at 157.178 kb on + strand at 157.184 kb on + strand at 157.207 kb on + strand at 157.214 kb on - strand at 157.248 kb on - strand at 157.255 kb on - strand at 157.317 kb on + strand at 157.512 kb on + strand, within Synpcc7942_0156 at 157.527 kb on + strand, within Synpcc7942_0156 at 157.625 kb on - strand, within Synpcc7942_0156 at 157.630 kb on + strand, within Synpcc7942_0156 at 157.700 kb on + strand, within Synpcc7942_0156 at 157.737 kb on - strand, within Synpcc7942_0156 at 157.737 kb on - strand, within Synpcc7942_0156 at 157.737 kb on - strand, within Synpcc7942_0156 at 157.829 kb on + strand, within Synpcc7942_0156 at 157.870 kb on + strand, within Synpcc7942_0156 at 157.882 kb on - strand, within Synpcc7942_0156 at 157.889 kb on + strand, within Synpcc7942_0156 at 157.889 kb on + strand, within Synpcc7942_0156 at 157.889 kb on + strand, within Synpcc7942_0156 at 157.897 kb on - strand, within Synpcc7942_0156 at 157.897 kb on - strand, within Synpcc7942_0156 at 157.897 kb on - strand, within Synpcc7942_0156 at 157.907 kb on - strand, within Synpcc7942_0156 at 158.152 kb on + strand, within Synpcc7942_0156 at 158.318 kb on - strand, within Synpcc7942_0156 at 158.339 kb on - strand, within Synpcc7942_0156 at 158.339 kb on - strand, within Synpcc7942_0156 at 158.574 kb on + strand, within Synpcc7942_0156 at 158.609 kb on + strand, within Synpcc7942_0156 at 158.696 kb on + strand at 158.702 kb on + strand at 158.781 kb on + strand at 158.845 kb on + strand at 158.863 kb on + strand at 158.863 kb on + strand at 158.871 kb on - strand at 158.871 kb on - strand at 158.898 kb on - strand at 158.968 kb on + strand at 158.985 kb on - strand at 159.034 kb on - strand at 159.034 kb on - strand at 159.034 kb on - strand at 159.038 kb on + strand at 159.046 kb on - strand at 159.046 kb on - strand at 159.048 kb on + strand at 159.050 kb on + strand at 159.056 kb on - strand at 159.056 kb on - strand at 159.056 kb on - strand at 159.056 kb on - strand at 159.072 kb on + strand at 159.101 kb on - strand, within Synpcc7942_0157 at 159.115 kb on - strand, within Synpcc7942_0157 at 159.126 kb on - strand, within Synpcc7942_0157 at 159.153 kb on - strand, within Synpcc7942_0157 at 159.163 kb on - strand, within Synpcc7942_0157 at 159.182 kb on - strand, within Synpcc7942_0157 at 159.186 kb on + strand, within Synpcc7942_0157 at 159.194 kb on - strand, within Synpcc7942_0157 at 159.194 kb on - strand, within Synpcc7942_0157 at 159.194 kb on - strand, within Synpcc7942_0157 at 159.194 kb on - strand, within Synpcc7942_0157 at 159.196 kb on + strand, within Synpcc7942_0157 at 159.219 kb on + strand, within Synpcc7942_0157 at 159.244 kb on - strand, within Synpcc7942_0157 at 159.286 kb on - strand, within Synpcc7942_0157 at 159.317 kb on + strand, within Synpcc7942_0157 at 159.374 kb on + strand, within Synpcc7942_0157 at 159.392 kb on - strand, within Synpcc7942_0157 at 159.398 kb on - strand, within Synpcc7942_0157 at 159.404 kb on + strand, within Synpcc7942_0157 at 159.417 kb on - strand, within Synpcc7942_0157 at 159.417 kb on - strand, within Synpcc7942_0157 at 159.417 kb on - strand, within Synpcc7942_0157 at 159.439 kb on + strand, within Synpcc7942_0157 at 159.461 kb on + strand, within Synpcc7942_0157 at 159.478 kb on - strand, within Synpcc7942_0157 at 159.486 kb on + strand, within Synpcc7942_0157 at 159.486 kb on + strand, within Synpcc7942_0157 at 159.494 kb on - strand, within Synpcc7942_0157 at 159.506 kb on + strand, within Synpcc7942_0157 at 159.506 kb on + strand, within Synpcc7942_0157 at 159.514 kb on - strand at 159.514 kb on - strand at 159.517 kb on - strand at 159.544 kb on - strand at 159.560 kb on + strand at 159.568 kb on + strand at 159.655 kb on + strand at 159.666 kb on + strand at 159.674 kb on - strand at 159.684 kb on - strand at 159.751 kb on - strand at 159.753 kb on - strand at 159.758 kb on - strand at 159.826 kb on + strand at 159.826 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.0078125 mg/ml remove 156,332 - -2.3 156,366 - +1.9 156,366 - -1.3 156,366 - +2.7 156,366 - +2.0 156,410 + Synpcc7942_0154 0.11 +3.5 156,431 + Synpcc7942_0154 0.15 -0.3 156,431 + Synpcc7942_0154 0.15 -1.3 156,434 - Synpcc7942_0154 0.15 +0.1 156,439 - Synpcc7942_0154 0.16 -0.3 156,439 - Synpcc7942_0154 0.16 -0.3 156,439 - Synpcc7942_0154 0.16 +0.3 156,449 + Synpcc7942_0154 0.18 -2.3 156,449 + Synpcc7942_0154 0.18 +3.0 156,470 + Synpcc7942_0154 0.21 +3.5 156,512 - Synpcc7942_0154 0.28 +0.3 156,512 - Synpcc7942_0154 0.28 -2.3 156,525 + Synpcc7942_0154 0.30 +3.0 156,525 + Synpcc7942_0154 0.30 +1.7 156,539 + Synpcc7942_0154 0.32 +0.3 156,539 + Synpcc7942_0154 0.32 +2.3 156,539 + Synpcc7942_0154 0.32 +1.0 156,549 + Synpcc7942_0154 0.34 +2.5 156,569 - Synpcc7942_0154 0.37 +2.4 156,571 - Synpcc7942_0154 0.37 +2.0 156,571 - Synpcc7942_0154 0.37 +4.3 156,572 + Synpcc7942_0154 0.38 +1.4 156,576 - Synpcc7942_0154 0.38 -2.3 156,590 - Synpcc7942_0154 0.40 +0.7 156,599 + Synpcc7942_0154 0.42 +0.7 156,599 + Synpcc7942_0154 0.42 +3.8 156,599 + Synpcc7942_0154 0.42 +0.8 156,607 - Synpcc7942_0154 0.43 +4.6 156,629 + Synpcc7942_0154 0.47 -0.3 156,637 - Synpcc7942_0154 0.48 +2.5 156,637 - Synpcc7942_0154 0.48 -1.9 156,657 - Synpcc7942_0154 0.51 -0.3 156,659 - Synpcc7942_0154 0.52 -0.7 156,661 + Synpcc7942_0154 0.52 -0.7 156,692 - Synpcc7942_0154 0.57 -2.6 156,719 + Synpcc7942_0154 0.61 +2.1 156,758 - Synpcc7942_0154 0.68 +0.3 156,782 - Synpcc7942_0154 0.72 +4.0 156,851 - Synpcc7942_0154 0.83 -0.0 156,857 + Synpcc7942_0154 0.84 +0.9 156,867 + Synpcc7942_0154 0.85 -0.9 156,878 + Synpcc7942_0154 0.87 +0.3 156,878 + Synpcc7942_0154 0.87 +3.0 156,904 + +1.3 156,933 + +2.0 156,933 + -2.9 156,933 + +3.0 156,941 - +2.5 156,941 - +3.1 156,941 - +3.1 156,963 + +2.5 156,976 - +3.8 156,989 - Synpcc7942_0155 0.15 -0.3 156,992 + Synpcc7942_0155 0.16 +3.9 157,004 + Synpcc7942_0155 0.22 +1.8 157,020 - Synpcc7942_0155 0.29 -0.3 157,087 - Synpcc7942_0155 0.58 -0.3 157,109 + Synpcc7942_0155 0.67 +0.4 157,109 + Synpcc7942_0155 0.67 +0.7 157,117 - Synpcc7942_0155 0.71 +1.0 157,159 - Synpcc7942_0155 0.89 -0.7 157,178 + +1.8 157,178 + +3.7 157,184 + -0.3 157,207 + +2.3 157,214 - +2.0 157,248 - -1.3 157,255 - -3.1 157,317 + -2.3 157,512 + Synpcc7942_0156 0.19 -1.3 157,527 + Synpcc7942_0156 0.19 -1.3 157,625 - Synpcc7942_0156 0.25 -1.3 157,630 + Synpcc7942_0156 0.26 -2.9 157,700 + Synpcc7942_0156 0.30 -0.3 157,737 - Synpcc7942_0156 0.32 -1.3 157,737 - Synpcc7942_0156 0.32 -2.3 157,737 - Synpcc7942_0156 0.32 -1.3 157,829 + Synpcc7942_0156 0.38 -1.1 157,870 + Synpcc7942_0156 0.40 +0.3 157,882 - Synpcc7942_0156 0.41 -2.9 157,889 + Synpcc7942_0156 0.42 -2.3 157,889 + Synpcc7942_0156 0.42 -0.5 157,889 + Synpcc7942_0156 0.42 -1.9 157,897 - Synpcc7942_0156 0.42 -0.3 157,897 - Synpcc7942_0156 0.42 -0.3 157,897 - Synpcc7942_0156 0.42 -2.1 157,907 - Synpcc7942_0156 0.43 -1.3 158,152 + Synpcc7942_0156 0.58 -1.3 158,318 - Synpcc7942_0156 0.68 -0.3 158,339 - Synpcc7942_0156 0.69 -0.9 158,339 - Synpcc7942_0156 0.69 -1.3 158,574 + Synpcc7942_0156 0.84 -0.3 158,609 + Synpcc7942_0156 0.86 +0.1 158,696 + -1.9 158,702 + +0.7 158,781 + +0.8 158,845 + +1.6 158,863 + +0.9 158,863 + +2.5 158,871 - +3.0 158,871 - +2.8 158,898 - +1.2 158,968 + +2.2 158,985 - -1.3 159,034 - +1.3 159,034 - +1.2 159,034 - -1.3 159,038 + +0.5 159,046 - +2.4 159,046 - +2.0 159,048 + +0.5 159,050 + +2.5 159,056 - -0.3 159,056 - +1.3 159,056 - +2.6 159,056 - +1.7 159,072 + -1.9 159,101 - Synpcc7942_0157 0.11 +4.0 159,115 - Synpcc7942_0157 0.14 +2.0 159,126 - Synpcc7942_0157 0.16 +0.1 159,153 - Synpcc7942_0157 0.21 +2.7 159,163 - Synpcc7942_0157 0.23 +3.3 159,182 - Synpcc7942_0157 0.27 +0.7 159,186 + Synpcc7942_0157 0.28 +3.8 159,194 - Synpcc7942_0157 0.29 -0.3 159,194 - Synpcc7942_0157 0.29 +3.4 159,194 - Synpcc7942_0157 0.29 +0.6 159,194 - Synpcc7942_0157 0.29 +0.7 159,196 + Synpcc7942_0157 0.30 +0.3 159,219 + Synpcc7942_0157 0.34 +0.7 159,244 - Synpcc7942_0157 0.39 -0.0 159,286 - Synpcc7942_0157 0.47 +1.7 159,317 + Synpcc7942_0157 0.53 -1.5 159,374 + Synpcc7942_0157 0.64 +0.9 159,392 - Synpcc7942_0157 0.67 +2.3 159,398 - Synpcc7942_0157 0.69 -0.3 159,404 + Synpcc7942_0157 0.70 -2.6 159,417 - Synpcc7942_0157 0.72 +3.1 159,417 - Synpcc7942_0157 0.72 -0.3 159,417 - Synpcc7942_0157 0.72 +2.3 159,439 + Synpcc7942_0157 0.76 +1.8 159,461 + Synpcc7942_0157 0.81 +3.1 159,478 - Synpcc7942_0157 0.84 +0.0 159,486 + Synpcc7942_0157 0.86 +1.3 159,486 + Synpcc7942_0157 0.86 +0.7 159,494 - Synpcc7942_0157 0.87 -0.7 159,506 + Synpcc7942_0157 0.89 +1.5 159,506 + Synpcc7942_0157 0.89 +1.0 159,514 - +0.7 159,514 - +4.1 159,517 - +0.4 159,544 - +2.3 159,560 + -0.3 159,568 + -2.9 159,655 + +3.0 159,666 + +1.6 159,674 - -0.3 159,684 - -1.9 159,751 - +1.1 159,753 - -1.3 159,758 - -0.3 159,826 + +1.3 159,826 + +0.9
Or see this region's nucleotide sequence