Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0116

Experiment: Nalidixic 0.0078125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nalidixic 0.0078125 mg/ml
113,305	-				+2.3
113,305	-				-0.1
113,305	-				+2.9
113,305	-				-1.9
113,345	-				+1.8
113,374	+		Synpcc7942_0114	0.13	+2.4
113,425	-		Synpcc7942_0114	0.26	-0.3
113,445	-		Synpcc7942_0114	0.32	-1.3
113,461	+		Synpcc7942_0114	0.36	+1.5
113,478	+		Synpcc7942_0114	0.41	-1.3
113,478	+				-1.3
113,486	-		Synpcc7942_0114	0.43	+2.6
113,486	-		Synpcc7942_0114	0.43	-1.3
113,530	-		Synpcc7942_0114	0.55	+0.5
113,530	-		Synpcc7942_0114	0.55	+1.0
113,530	-		Synpcc7942_0114	0.55	+1.0
113,535	-		Synpcc7942_0114	0.56	-0.3
113,535	-		Synpcc7942_0114	0.56	-1.3
113,590	+		Synpcc7942_0114	0.71	+0.3
113,598	-		Synpcc7942_0114	0.73	+1.3
113,617	+		Synpcc7942_0114	0.78	-0.3
113,620	-		Synpcc7942_0114	0.79	-2.6
113,649	+				-1.5
113,649	+				+2.4
113,657	-				+1.9
113,663	+				-1.3
113,663	+				-1.9
113,730	+		Synpcc7942_0115	0.19	-0.9
113,733	+		Synpcc7942_0115	0.20	+2.5
113,733	+		Synpcc7942_0115	0.20	+1.9
113,733	+		Synpcc7942_0115	0.20	-0.3
113,741	-		Synpcc7942_0115	0.21	-2.3
113,760	+		Synpcc7942_0115	0.25	+0.7
113,760	+		Synpcc7942_0115	0.25	-0.3
113,768	-		Synpcc7942_0115	0.27	+0.5
113,774	-		Synpcc7942_0115	0.28	+2.5
113,774	-		Synpcc7942_0115	0.28	-0.3
113,774	-		Synpcc7942_0115	0.28	+1.5
113,807	+		Synpcc7942_0115	0.34	+1.9
113,861	+		Synpcc7942_0115	0.45	+3.3
113,921	+		Synpcc7942_0115	0.56	+3.1
113,921	+		Synpcc7942_0115	0.56	-1.3
113,921	+		Synpcc7942_0115	0.56	+2.6
113,965	+		Synpcc7942_0115	0.65	+0.6
113,981	-		Synpcc7942_0115	0.68	+1.0
113,988	-		Synpcc7942_0115	0.69	+0.9
113,995	+		Synpcc7942_0115	0.71	-1.9
113,995	+		Synpcc7942_0115	0.71	-2.3
113,995	+		Synpcc7942_0115	0.71	+1.5
114,003	-		Synpcc7942_0115	0.72	-0.3
114,003	-		Synpcc7942_0115	0.72	-1.6
114,003	-		Synpcc7942_0115	0.72	-1.1
114,018	+		Synpcc7942_0115	0.75	-2.6
114,029	+		Synpcc7942_0115	0.77	+1.8
114,037	-		Synpcc7942_0115	0.79	+2.7
114,037	-		Synpcc7942_0115	0.79	+3.5
114,066	+		Synpcc7942_0115	0.84	+1.2
114,086	+		Synpcc7942_0115	0.88	+2.3
114,091	+		Synpcc7942_0115	0.89	-0.3
114,136	+				+1.3
114,141	+				-1.3
114,141	+				-0.3
114,156	+				+2.8
114,175	+				+1.4
114,176	+				-1.3
114,183	-				-0.3
114,261	+				+0.3
114,300	+				-0.3
114,348	-				+0.7
114,391	+				+0.3
114,393	-				+1.8
114,399	-	cscK	Synpcc7942_0116	0.10	-1.3
114,450	-	cscK	Synpcc7942_0116	0.15	+1.7
114,477	-	cscK	Synpcc7942_0116	0.18	+0.5
114,491	-	cscK	Synpcc7942_0116	0.20	+1.4
114,491	-	cscK	Synpcc7942_0116	0.20	+2.4
114,491	-	cscK	Synpcc7942_0116	0.20	+0.7
114,518	+	cscK	Synpcc7942_0116	0.22	+0.7
114,518	+	cscK	Synpcc7942_0116	0.22	-0.3
114,538	-	cscK	Synpcc7942_0116	0.25	-0.1
114,548	+	cscK	Synpcc7942_0116	0.26	+3.1
114,548	+	cscK	Synpcc7942_0116	0.26	-0.3
114,556	-	cscK	Synpcc7942_0116	0.26	+2.1
114,580	+	cscK	Synpcc7942_0116	0.29	+0.3
114,588	-	cscK	Synpcc7942_0116	0.30	+1.2
114,605	+	cscK	Synpcc7942_0116	0.31	+2.4
114,624	+	cscK	Synpcc7942_0116	0.33	-1.3
114,715	+	cscK	Synpcc7942_0116	0.43	+2.8
114,717	+	cscK	Synpcc7942_0116	0.43	+0.7
114,725	-	cscK	Synpcc7942_0116	0.44	+0.3
114,745	-	cscK	Synpcc7942_0116	0.46	+1.1
114,750	-	cscK	Synpcc7942_0116	0.46	+2.3
114,750	-	cscK	Synpcc7942_0116	0.46	+2.7
114,801	-	cscK	Synpcc7942_0116	0.51	+3.0
114,803	-	cscK	Synpcc7942_0116	0.52	-1.9
114,812	+	cscK	Synpcc7942_0116	0.53	+1.8
115,021	-	cscK	Synpcc7942_0116	0.74	+3.1
115,124	+	cscK	Synpcc7942_0116	0.85	+0.1
115,146	+	cscK	Synpcc7942_0116	0.87	+1.4
115,172	+	cscK	Synpcc7942_0116	0.90	-0.3
116,040	+		Synpcc7942_0117	0.49	-1.3
116,268	-		Synpcc7942_0117	0.66	+3.7