Experiment: Nalidixic 0.0078125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt degT and Synpcc7942_0072 are separated by 167 nucleotides Synpcc7942_0072 and lytB are separated by 39 nucleotides
Synpcc7942_0071: degT - pleiotropic regulatory protein-like, at 69,940 to 71,139
degT
Synpcc7942_0072: Synpcc7942_0072 - hypothetical protein, at 71,307 to 71,960
_0072
Synpcc7942_0073: lytB - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 72,000 to 73,196
lytB
Position (kb) 71
72 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 71.112 kb on + strand at 71.134 kb on + strand at 71.146 kb on - strand at 71.159 kb on - strand at 71.160 kb on - strand at 71.171 kb on + strand at 71.171 kb on + strand at 71.171 kb on + strand at 71.171 kb on + strand at 71.171 kb on + strand at 71.171 kb on + strand at 71.179 kb on - strand at 71.179 kb on - strand at 71.179 kb on - strand at 71.242 kb on - strand at 71.262 kb on + strand at 71.288 kb on + strand at 71.294 kb on - strand at 71.296 kb on - strand at 71.378 kb on + strand, within Synpcc7942_0072 at 71.386 kb on - strand, within Synpcc7942_0072 at 71.396 kb on - strand, within Synpcc7942_0072 at 71.396 kb on - strand, within Synpcc7942_0072 at 71.431 kb on + strand, within Synpcc7942_0072 at 71.431 kb on + strand, within Synpcc7942_0072 at 71.480 kb on - strand, within Synpcc7942_0072 at 71.485 kb on - strand, within Synpcc7942_0072 at 71.499 kb on - strand, within Synpcc7942_0072 at 71.503 kb on + strand, within Synpcc7942_0072 at 71.511 kb on - strand, within Synpcc7942_0072 at 71.571 kb on - strand, within Synpcc7942_0072 at 71.576 kb on - strand, within Synpcc7942_0072 at 71.604 kb on - strand, within Synpcc7942_0072 at 71.610 kb on + strand, within Synpcc7942_0072 at 71.629 kb on - strand, within Synpcc7942_0072 at 71.634 kb on - strand, within Synpcc7942_0072 at 71.634 kb on - strand, within Synpcc7942_0072 at 71.653 kb on - strand, within Synpcc7942_0072 at 71.661 kb on - strand at 71.694 kb on + strand, within Synpcc7942_0072 at 71.694 kb on + strand, within Synpcc7942_0072 at 71.701 kb on + strand, within Synpcc7942_0072 at 71.709 kb on - strand, within Synpcc7942_0072 at 71.742 kb on - strand, within Synpcc7942_0072 at 71.772 kb on + strand, within Synpcc7942_0072 at 71.817 kb on - strand, within Synpcc7942_0072 at 71.824 kb on - strand, within Synpcc7942_0072 at 71.827 kb on - strand, within Synpcc7942_0072 at 71.834 kb on + strand, within Synpcc7942_0072 at 71.881 kb on - strand, within Synpcc7942_0072 at 71.892 kb on - strand, within Synpcc7942_0072 at 71.903 kb on + strand at 71.911 kb on - strand at 71.918 kb on - strand at 71.918 kb on - strand at 71.942 kb on - strand at 71.962 kb on - strand at 71.966 kb on - strand at 71.972 kb on - strand at 71.974 kb on - strand at 71.998 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.0078125 mg/ml remove 71,112 + +2.7 71,134 + -1.9 71,146 - -0.6 71,159 - +3.9 71,160 - -1.3 71,171 + -0.3 71,171 + +0.9 71,171 + +1.3 71,171 + +2.1 71,171 + -0.8 71,171 + +2.3 71,179 - -0.9 71,179 - +4.3 71,179 - +2.3 71,242 - +2.6 71,262 + -0.3 71,288 + -2.6 71,294 - -1.3 71,296 - -1.1 71,378 + Synpcc7942_0072 0.11 -0.9 71,386 - Synpcc7942_0072 0.12 +1.7 71,396 - Synpcc7942_0072 0.14 -0.3 71,396 - Synpcc7942_0072 0.14 -0.3 71,431 + Synpcc7942_0072 0.19 -0.3 71,431 + Synpcc7942_0072 0.19 +2.0 71,480 - Synpcc7942_0072 0.26 -1.3 71,485 - Synpcc7942_0072 0.27 +0.5 71,499 - Synpcc7942_0072 0.29 -1.3 71,503 + Synpcc7942_0072 0.30 -1.3 71,511 - Synpcc7942_0072 0.31 -1.3 71,571 - Synpcc7942_0072 0.40 -1.9 71,576 - Synpcc7942_0072 0.41 +1.3 71,604 - Synpcc7942_0072 0.45 -1.9 71,610 + Synpcc7942_0072 0.46 -1.3 71,629 - Synpcc7942_0072 0.49 -2.6 71,634 - Synpcc7942_0072 0.50 +2.5 71,634 - Synpcc7942_0072 0.50 +1.3 71,653 - Synpcc7942_0072 0.53 -1.3 71,661 - +1.7 71,694 + Synpcc7942_0072 0.59 +2.0 71,694 + Synpcc7942_0072 0.59 -1.6 71,701 + Synpcc7942_0072 0.60 -0.9 71,709 - Synpcc7942_0072 0.61 +1.0 71,742 - Synpcc7942_0072 0.67 -0.9 71,772 + Synpcc7942_0072 0.71 -1.3 71,817 - Synpcc7942_0072 0.78 -0.3 71,824 - Synpcc7942_0072 0.79 +0.3 71,827 - Synpcc7942_0072 0.80 -0.1 71,834 + Synpcc7942_0072 0.81 +3.5 71,881 - Synpcc7942_0072 0.88 -2.3 71,892 - Synpcc7942_0072 0.89 -1.3 71,903 + -0.3 71,911 - +1.0 71,918 - -0.3 71,918 - -2.1 71,942 - -1.3 71,962 - -1.9 71,966 - +2.5 71,972 - -1.3 71,974 - -2.6 71,998 + +1.7
Or see this region's nucleotide sequence