Experiment: Nalidixic 0.0078125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0025 and Synpcc7942_0026 overlap by 41 nucleotides Synpcc7942_0026 and bioF are separated by 124 nucleotides
Synpcc7942_0025: Synpcc7942_0025 - hypothetical protein, at 25,416 to 27,122
_0025
Synpcc7942_0026: Synpcc7942_0026 - hypothetical protein, at 27,082 to 28,059
_0026
Synpcc7942_0027: bioF - 8-amino-7-oxononanoate synthase, at 28,184 to 29,350
bioF
Position (kb) 27
28
29 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6
7 at 26.101 kb on + strand, within Synpcc7942_0025 at 26.113 kb on + strand, within Synpcc7942_0025 at 26.126 kb on - strand, within Synpcc7942_0025 at 26.126 kb on - strand, within Synpcc7942_0025 at 26.137 kb on - strand, within Synpcc7942_0025 at 26.137 kb on - strand, within Synpcc7942_0025 at 26.147 kb on - strand, within Synpcc7942_0025 at 26.159 kb on - strand, within Synpcc7942_0025 at 26.170 kb on - strand, within Synpcc7942_0025 at 26.201 kb on + strand, within Synpcc7942_0025 at 26.209 kb on - strand, within Synpcc7942_0025 at 26.220 kb on + strand, within Synpcc7942_0025 at 26.228 kb on - strand, within Synpcc7942_0025 at 26.228 kb on - strand, within Synpcc7942_0025 at 26.248 kb on - strand, within Synpcc7942_0025 at 26.305 kb on + strand, within Synpcc7942_0025 at 26.311 kb on + strand, within Synpcc7942_0025 at 26.313 kb on - strand, within Synpcc7942_0025 at 26.325 kb on - strand, within Synpcc7942_0025 at 26.334 kb on + strand, within Synpcc7942_0025 at 26.376 kb on + strand, within Synpcc7942_0025 at 26.397 kb on - strand, within Synpcc7942_0025 at 26.406 kb on - strand, within Synpcc7942_0025 at 26.417 kb on + strand, within Synpcc7942_0025 at 26.418 kb on + strand, within Synpcc7942_0025 at 26.425 kb on - strand, within Synpcc7942_0025 at 26.463 kb on + strand, within Synpcc7942_0025 at 26.507 kb on - strand, within Synpcc7942_0025 at 26.507 kb on - strand, within Synpcc7942_0025 at 26.529 kb on + strand, within Synpcc7942_0025 at 26.529 kb on + strand, within Synpcc7942_0025 at 26.548 kb on - strand, within Synpcc7942_0025 at 26.575 kb on - strand, within Synpcc7942_0025 at 26.585 kb on - strand, within Synpcc7942_0025 at 26.595 kb on + strand, within Synpcc7942_0025 at 26.597 kb on + strand, within Synpcc7942_0025 at 26.597 kb on + strand, within Synpcc7942_0025 at 26.597 kb on - strand, within Synpcc7942_0025 at 26.602 kb on + strand, within Synpcc7942_0025 at 26.605 kb on - strand, within Synpcc7942_0025 at 26.605 kb on - strand, within Synpcc7942_0025 at 26.632 kb on - strand, within Synpcc7942_0025 at 26.640 kb on - strand, within Synpcc7942_0025 at 26.656 kb on + strand, within Synpcc7942_0025 at 26.664 kb on - strand, within Synpcc7942_0025 at 26.669 kb on - strand, within Synpcc7942_0025 at 26.690 kb on - strand, within Synpcc7942_0025 at 26.720 kb on + strand, within Synpcc7942_0025 at 26.726 kb on - strand, within Synpcc7942_0025 at 26.736 kb on - strand, within Synpcc7942_0025 at 26.740 kb on + strand, within Synpcc7942_0025 at 26.740 kb on + strand, within Synpcc7942_0025 at 26.750 kb on + strand, within Synpcc7942_0025 at 26.760 kb on - strand, within Synpcc7942_0025 at 26.798 kb on - strand, within Synpcc7942_0025 at 26.809 kb on - strand, within Synpcc7942_0025 at 26.810 kb on + strand, within Synpcc7942_0025 at 26.818 kb on - strand, within Synpcc7942_0025 at 26.826 kb on + strand, within Synpcc7942_0025 at 26.834 kb on - strand, within Synpcc7942_0025 at 26.847 kb on + strand, within Synpcc7942_0025 at 26.876 kb on - strand, within Synpcc7942_0025 at 26.894 kb on + strand, within Synpcc7942_0025 at 26.895 kb on + strand, within Synpcc7942_0025 at 26.903 kb on - strand, within Synpcc7942_0025 at 26.925 kb on + strand, within Synpcc7942_0025 at 26.930 kb on + strand, within Synpcc7942_0025 at 26.930 kb on + strand, within Synpcc7942_0025 at 26.938 kb on - strand, within Synpcc7942_0025 at 26.944 kb on - strand, within Synpcc7942_0025 at 26.970 kb on - strand at 26.972 kb on + strand at 26.980 kb on - strand at 26.980 kb on - strand at 26.980 kb on - strand at 26.984 kb on - strand at 26.988 kb on + strand at 27.006 kb on + strand at 27.012 kb on + strand at 27.042 kb on - strand at 27.051 kb on - strand at 27.072 kb on - strand at 27.077 kb on + strand at 27.111 kb on + strand at 27.116 kb on + strand at 27.116 kb on + strand at 27.119 kb on - strand at 27.144 kb on + strand at 27.144 kb on + strand at 27.144 kb on + strand at 27.144 kb on + strand at 27.152 kb on - strand at 27.152 kb on - strand at 27.163 kb on + strand at 27.176 kb on + strand at 27.181 kb on + strand, within Synpcc7942_0026 at 27.184 kb on - strand, within Synpcc7942_0026 at 27.187 kb on + strand, within Synpcc7942_0026 at 27.189 kb on - strand, within Synpcc7942_0026 at 27.189 kb on - strand, within Synpcc7942_0026 at 27.189 kb on - strand, within Synpcc7942_0026 at 27.189 kb on - strand, within Synpcc7942_0026 at 27.189 kb on - strand, within Synpcc7942_0026 at 27.190 kb on - strand, within Synpcc7942_0026 at 27.190 kb on - strand, within Synpcc7942_0026 at 27.192 kb on + strand, within Synpcc7942_0026 at 27.195 kb on - strand, within Synpcc7942_0026 at 27.218 kb on + strand at 27.224 kb on + strand, within Synpcc7942_0026 at 27.224 kb on + strand, within Synpcc7942_0026 at 27.232 kb on - strand, within Synpcc7942_0026 at 27.237 kb on + strand, within Synpcc7942_0026 at 27.247 kb on + strand, within Synpcc7942_0026 at 27.247 kb on + strand, within Synpcc7942_0026 at 27.247 kb on + strand, within Synpcc7942_0026 at 27.254 kb on - strand, within Synpcc7942_0026 at 27.254 kb on - strand, within Synpcc7942_0026 at 27.255 kb on - strand, within Synpcc7942_0026 at 27.255 kb on - strand, within Synpcc7942_0026 at 27.255 kb on - strand, within Synpcc7942_0026 at 27.256 kb on + strand at 27.271 kb on - strand, within Synpcc7942_0026 at 27.294 kb on - strand, within Synpcc7942_0026 at 27.294 kb on - strand, within Synpcc7942_0026 at 27.312 kb on - strand, within Synpcc7942_0026 at 27.366 kb on + strand, within Synpcc7942_0026 at 27.371 kb on + strand, within Synpcc7942_0026 at 27.397 kb on + strand, within Synpcc7942_0026 at 27.409 kb on + strand, within Synpcc7942_0026 at 27.421 kb on + strand, within Synpcc7942_0026 at 27.423 kb on - strand, within Synpcc7942_0026 at 27.423 kb on - strand at 27.424 kb on - strand, within Synpcc7942_0026 at 27.424 kb on - strand, within Synpcc7942_0026 at 27.426 kb on + strand, within Synpcc7942_0026 at 27.505 kb on - strand, within Synpcc7942_0026 at 27.511 kb on + strand, within Synpcc7942_0026 at 27.541 kb on + strand, within Synpcc7942_0026 at 27.541 kb on + strand, within Synpcc7942_0026 at 27.541 kb on + strand, within Synpcc7942_0026 at 27.644 kb on - strand, within Synpcc7942_0026 at 27.700 kb on + strand, within Synpcc7942_0026 at 27.734 kb on + strand, within Synpcc7942_0026 at 27.751 kb on + strand, within Synpcc7942_0026 at 27.756 kb on - strand, within Synpcc7942_0026 at 27.780 kb on + strand, within Synpcc7942_0026 at 27.780 kb on + strand, within Synpcc7942_0026 at 27.790 kb on + strand, within Synpcc7942_0026 at 27.798 kb on - strand, within Synpcc7942_0026 at 27.807 kb on + strand, within Synpcc7942_0026 at 27.813 kb on + strand, within Synpcc7942_0026 at 27.814 kb on + strand, within Synpcc7942_0026 at 27.815 kb on - strand, within Synpcc7942_0026 at 27.825 kb on + strand, within Synpcc7942_0026 at 27.871 kb on + strand, within Synpcc7942_0026 at 27.871 kb on + strand, within Synpcc7942_0026 at 27.873 kb on + strand, within Synpcc7942_0026 at 27.873 kb on + strand, within Synpcc7942_0026 at 27.879 kb on - strand, within Synpcc7942_0026 at 27.926 kb on + strand, within Synpcc7942_0026 at 27.943 kb on + strand, within Synpcc7942_0026 at 27.951 kb on - strand, within Synpcc7942_0026 at 27.951 kb on - strand, within Synpcc7942_0026 at 27.962 kb on + strand at 27.962 kb on + strand at 27.962 kb on + strand at 27.970 kb on - strand at 27.970 kb on - strand at 27.986 kb on + strand at 28.008 kb on - strand at 28.008 kb on - strand at 28.035 kb on + strand at 28.051 kb on + strand at 28.056 kb on + strand at 28.062 kb on - strand at 28.064 kb on - strand at 28.074 kb on - strand at 28.112 kb on + strand at 28.118 kb on - strand at 28.121 kb on + strand at 28.135 kb on + strand at 28.135 kb on + strand at 28.179 kb on + strand at 28.179 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.0078125 mg/ml remove 26,101 + Synpcc7942_0025 0.40 -1.9 26,113 + Synpcc7942_0025 0.41 +2.1 26,126 - Synpcc7942_0025 0.42 +1.0 26,126 - Synpcc7942_0025 0.42 -1.3 26,137 - Synpcc7942_0025 0.42 +2.7 26,137 - Synpcc7942_0025 0.42 +0.4 26,147 - Synpcc7942_0025 0.43 -1.3 26,159 - Synpcc7942_0025 0.44 +0.3 26,170 - Synpcc7942_0025 0.44 +3.0 26,201 + Synpcc7942_0025 0.46 +0.7 26,209 - Synpcc7942_0025 0.46 +3.1 26,220 + Synpcc7942_0025 0.47 -1.3 26,228 - Synpcc7942_0025 0.48 -0.3 26,228 - Synpcc7942_0025 0.48 +3.9 26,248 - Synpcc7942_0025 0.49 -0.3 26,305 + Synpcc7942_0025 0.52 -0.7 26,311 + Synpcc7942_0025 0.52 +1.3 26,313 - Synpcc7942_0025 0.53 -0.0 26,325 - Synpcc7942_0025 0.53 -1.9 26,334 + Synpcc7942_0025 0.54 +1.1 26,376 + Synpcc7942_0025 0.56 +0.7 26,397 - Synpcc7942_0025 0.57 +0.1 26,406 - Synpcc7942_0025 0.58 -1.3 26,417 + Synpcc7942_0025 0.59 -0.6 26,418 + Synpcc7942_0025 0.59 +2.7 26,425 - Synpcc7942_0025 0.59 -1.3 26,463 + Synpcc7942_0025 0.61 -2.3 26,507 - Synpcc7942_0025 0.64 -2.3 26,507 - Synpcc7942_0025 0.64 +0.7 26,529 + Synpcc7942_0025 0.65 -1.3 26,529 + Synpcc7942_0025 0.65 -0.3 26,548 - Synpcc7942_0025 0.66 +2.0 26,575 - Synpcc7942_0025 0.68 +3.4 26,585 - Synpcc7942_0025 0.68 -0.1 26,595 + Synpcc7942_0025 0.69 -0.9 26,597 + Synpcc7942_0025 0.69 +2.0 26,597 + Synpcc7942_0025 0.69 -1.6 26,597 - Synpcc7942_0025 0.69 -1.3 26,602 + Synpcc7942_0025 0.69 -1.9 26,605 - Synpcc7942_0025 0.70 -0.1 26,605 - Synpcc7942_0025 0.70 -0.6 26,632 - Synpcc7942_0025 0.71 -1.3 26,640 - Synpcc7942_0025 0.72 +2.0 26,656 + Synpcc7942_0025 0.73 -4.3 26,664 - Synpcc7942_0025 0.73 +0.8 26,669 - Synpcc7942_0025 0.73 -0.3 26,690 - Synpcc7942_0025 0.75 +2.6 26,720 + Synpcc7942_0025 0.76 -0.3 26,726 - Synpcc7942_0025 0.77 +0.4 26,736 - Synpcc7942_0025 0.77 -1.3 26,740 + Synpcc7942_0025 0.78 -1.7 26,740 + Synpcc7942_0025 0.78 -2.3 26,750 + Synpcc7942_0025 0.78 -0.3 26,760 - Synpcc7942_0025 0.79 +2.8 26,798 - Synpcc7942_0025 0.81 -1.3 26,809 - Synpcc7942_0025 0.82 -0.3 26,810 + Synpcc7942_0025 0.82 +0.7 26,818 - Synpcc7942_0025 0.82 -2.3 26,826 + Synpcc7942_0025 0.83 -0.7 26,834 - Synpcc7942_0025 0.83 +2.1 26,847 + Synpcc7942_0025 0.84 -0.9 26,876 - Synpcc7942_0025 0.86 -0.3 26,894 + Synpcc7942_0025 0.87 +2.7 26,895 + Synpcc7942_0025 0.87 +1.3 26,903 - Synpcc7942_0025 0.87 -0.3 26,925 + Synpcc7942_0025 0.88 +0.4 26,930 + Synpcc7942_0025 0.89 +0.7 26,930 + Synpcc7942_0025 0.89 -1.9 26,938 - Synpcc7942_0025 0.89 -0.9 26,944 - Synpcc7942_0025 0.90 -1.3 26,970 - +0.8 26,972 + -1.3 26,980 - -1.3 26,980 - +1.5 26,980 - +1.4 26,984 - +0.7 26,988 + -1.3 27,006 + -1.3 27,012 + -0.3 27,042 - -1.3 27,051 - -0.3 27,072 - +0.7 27,077 + -0.7 27,111 + +2.4 27,116 + -2.3 27,116 + +2.4 27,119 - +4.4 27,144 + -0.9 27,144 + -1.9 27,144 + +1.5 27,144 + +4.9 27,152 - +0.5 27,152 - +2.0 27,163 + +2.3 27,176 + -0.9 27,181 + Synpcc7942_0026 0.10 +0.4 27,184 - Synpcc7942_0026 0.10 -2.6 27,187 + Synpcc7942_0026 0.11 +0.3 27,189 - Synpcc7942_0026 0.11 +1.0 27,189 - Synpcc7942_0026 0.11 +2.3 27,189 - Synpcc7942_0026 0.11 -1.3 27,189 - Synpcc7942_0026 0.11 +1.1 27,189 - Synpcc7942_0026 0.11 -2.6 27,190 - Synpcc7942_0026 0.11 +1.9 27,190 - Synpcc7942_0026 0.11 +2.7 27,192 + Synpcc7942_0026 0.11 -0.3 27,195 - Synpcc7942_0026 0.12 -0.7 27,218 + -1.9 27,224 + Synpcc7942_0026 0.15 -2.6 27,224 + Synpcc7942_0026 0.15 -1.9 27,232 - Synpcc7942_0026 0.15 +3.3 27,237 + Synpcc7942_0026 0.16 +1.8 27,247 + Synpcc7942_0026 0.17 +1.1 27,247 + Synpcc7942_0026 0.17 -0.3 27,247 + Synpcc7942_0026 0.17 +1.5 27,254 - Synpcc7942_0026 0.18 +3.3 27,254 - Synpcc7942_0026 0.18 +1.7 27,255 - Synpcc7942_0026 0.18 +2.0 27,255 - Synpcc7942_0026 0.18 +2.8 27,255 - Synpcc7942_0026 0.18 +2.5 27,256 + -0.3 27,271 - Synpcc7942_0026 0.19 -1.3 27,294 - Synpcc7942_0026 0.22 +3.1 27,294 - Synpcc7942_0026 0.22 +1.5 27,312 - Synpcc7942_0026 0.24 +3.6 27,366 + Synpcc7942_0026 0.29 -0.7 27,371 + Synpcc7942_0026 0.30 +3.7 27,397 + Synpcc7942_0026 0.32 +2.7 27,409 + Synpcc7942_0026 0.33 +3.1 27,421 + Synpcc7942_0026 0.35 -0.3 27,423 - Synpcc7942_0026 0.35 +2.7 27,423 - -0.3 27,424 - Synpcc7942_0026 0.35 +1.5 27,424 - Synpcc7942_0026 0.35 +0.7 27,426 + Synpcc7942_0026 0.35 -0.1 27,505 - Synpcc7942_0026 0.43 +2.5 27,511 + Synpcc7942_0026 0.44 -0.3 27,541 + Synpcc7942_0026 0.47 +1.7 27,541 + Synpcc7942_0026 0.47 +6.8 27,541 + Synpcc7942_0026 0.47 -2.3 27,644 - Synpcc7942_0026 0.57 +0.9 27,700 + Synpcc7942_0026 0.63 +3.5 27,734 + Synpcc7942_0026 0.67 -0.3 27,751 + Synpcc7942_0026 0.68 +2.4 27,756 - Synpcc7942_0026 0.69 +1.8 27,780 + Synpcc7942_0026 0.71 -3.1 27,780 + Synpcc7942_0026 0.71 +0.9 27,790 + Synpcc7942_0026 0.72 +2.5 27,798 - Synpcc7942_0026 0.73 -2.3 27,807 + Synpcc7942_0026 0.74 -1.3 27,813 + Synpcc7942_0026 0.75 +2.3 27,814 + Synpcc7942_0026 0.75 +2.1 27,815 - Synpcc7942_0026 0.75 +1.7 27,825 + Synpcc7942_0026 0.76 +0.9 27,871 + Synpcc7942_0026 0.81 +3.2 27,871 + Synpcc7942_0026 0.81 +3.1 27,873 + Synpcc7942_0026 0.81 -1.9 27,873 + Synpcc7942_0026 0.81 +1.0 27,879 - Synpcc7942_0026 0.81 -0.3 27,926 + Synpcc7942_0026 0.86 +2.7 27,943 + Synpcc7942_0026 0.88 +1.8 27,951 - Synpcc7942_0026 0.89 +1.6 27,951 - Synpcc7942_0026 0.89 -0.6 27,962 + +1.4 27,962 + +3.7 27,962 + +2.5 27,970 - +4.8 27,970 - +1.2 27,986 + -0.6 28,008 - +0.3 28,008 - +1.3 28,035 + -0.3 28,051 + -0.3 28,056 + -1.0 28,062 - +5.8 28,064 - -1.3 28,074 - +1.4 28,112 + -1.3 28,118 - +1.7 28,121 + +2.5 28,135 + -1.3 28,135 + +1.8 28,179 + +3.4 28,179 + +2.8
Or see this region's nucleotide sequence