Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0003

Experiment: Nalidixic 0.0078125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nalidixic 0.0078125 mg/ml
1,200	-				+3.6
1,231	+				-1.3
1,287	-				+1.4
1,294	+				+4.5
1,294	-				+1.1
1,348	-				+2.7
1,363	+		Synpcc7942_0002	0.12	-0.3
1,363	+		Synpcc7942_0002	0.12	+1.3
1,371	-		Synpcc7942_0002	0.12	+1.7
1,399	-		Synpcc7942_0002	0.16	-1.3
1,418	-		Synpcc7942_0002	0.18	+2.5
1,430	-		Synpcc7942_0002	0.19	+4.1
1,451	+		Synpcc7942_0002	0.22	+2.8
1,459	-		Synpcc7942_0002	0.23	+2.7
1,464	-		Synpcc7942_0002	0.23	+2.6
1,486	+		Synpcc7942_0002	0.26	+0.4
1,486	+		Synpcc7942_0002	0.26	-1.6
1,486	+		Synpcc7942_0002	0.26	+4.7
1,486	+		Synpcc7942_0002	0.26	+0.8
1,488	+		Synpcc7942_0002	0.26	-0.3
1,492	-		Synpcc7942_0002	0.26	+0.7
1,494	-		Synpcc7942_0002	0.27	-0.1
1,531	+		Synpcc7942_0002	0.31	+3.6
1,536	+		Synpcc7942_0002	0.31	-1.3
1,564	-		Synpcc7942_0002	0.35	+2.6
1,619	+		Synpcc7942_0002	0.41	+1.6
1,619	+		Synpcc7942_0002	0.41	+2.8
1,619	+		Synpcc7942_0002	0.41	+1.8
1,619	+		Synpcc7942_0002	0.41	-0.3
1,624	+		Synpcc7942_0002	0.41	+2.0
1,624	+		Synpcc7942_0002	0.41	+3.5
1,627	-		Synpcc7942_0002	0.42	+3.5
1,627	-		Synpcc7942_0002	0.42	+2.7
1,629	+		Synpcc7942_0002	0.42	-1.3
1,629	+		Synpcc7942_0002	0.42	+1.7
1,632	+		Synpcc7942_0002	0.42	+2.0
1,632	-		Synpcc7942_0002	0.42	-1.3
1,632	-		Synpcc7942_0002	0.42	-1.3
1,672	-		Synpcc7942_0002	0.47	+4.1
1,683	-		Synpcc7942_0002	0.48	+3.0
1,689	+		Synpcc7942_0002	0.49	+3.5
1,700	+		Synpcc7942_0002	0.50	-0.3
1,700	+		Synpcc7942_0002	0.50	+1.6
1,708	-		Synpcc7942_0002	0.51	+1.2
1,708	-		Synpcc7942_0002	0.51	+1.5
1,708	-		Synpcc7942_0002	0.51	+2.9
1,708	-		Synpcc7942_0002	0.51	+3.5
1,731	-		Synpcc7942_0002	0.54	+1.4
1,780	-		Synpcc7942_0002	0.59	+2.7
1,802	-		Synpcc7942_0002	0.62	+0.7
1,825	-		Synpcc7942_0002	0.64	-0.3
1,827	+		Synpcc7942_0002	0.65	+3.2
1,827	+		Synpcc7942_0002	0.65	+3.7
1,827	+				-1.3
1,835	-		Synpcc7942_0002	0.66	+3.6
1,856	-		Synpcc7942_0002	0.68	+3.1
1,862	-		Synpcc7942_0002	0.69	+1.8
1,868	+		Synpcc7942_0002	0.69	+3.2
1,882	+		Synpcc7942_0002	0.71	+3.4
1,882	+		Synpcc7942_0002	0.71	+1.5
1,890	-		Synpcc7942_0002	0.72	+1.3
1,904	+		Synpcc7942_0002	0.74	-0.9
1,912	-		Synpcc7942_0002	0.74	+3.4
1,912	-		Synpcc7942_0002	0.74	+2.5
1,912	-		Synpcc7942_0002	0.74	-1.3
1,912	-		Synpcc7942_0002	0.74	-1.1
1,912	-		Synpcc7942_0002	0.74	-1.3
1,913	-		Synpcc7942_0002	0.75	+0.4
1,915	+		Synpcc7942_0002	0.75	+1.9
1,915	+		Synpcc7942_0002	0.75	-1.9
1,925	+		Synpcc7942_0002	0.76	-0.3
1,937	+		Synpcc7942_0002	0.77	+2.3
1,937	+				+0.7
1,945	-		Synpcc7942_0002	0.78	-0.3
1,960	-		Synpcc7942_0002	0.80	-1.3
1,973	-		Synpcc7942_0002	0.81	+3.0
1,983	-		Synpcc7942_0002	0.83	+2.8
1,983	-		Synpcc7942_0002	0.83	-0.3
1,996	+		Synpcc7942_0002	0.84	+4.3
1,996	+		Synpcc7942_0002	0.84	+1.4
1,996	+		Synpcc7942_0002	0.84	-0.3
2,003	-		Synpcc7942_0002	0.85	-1.3
2,004	-		Synpcc7942_0002	0.85	+2.2
2,004	-		Synpcc7942_0002	0.85	+2.8
2,053	+				+1.8
2,129	+				-2.8
2,129	+				+1.1
2,129	+				-0.7
2,129	+				-2.3
2,728	-	purL	Synpcc7942_0003	0.24	-1.9
2,859	+	purL	Synpcc7942_0003	0.29	+0.7
2,941	+	purL	Synpcc7942_0003	0.33	+2.0
3,165	-	purL	Synpcc7942_0003	0.42	-1.3
3,457	+	purL	Synpcc7942_0003	0.55	-0.8
4,500	+				-1.9
4,519	+				-1.3
4,527	-				-2.3
4,594	-				-3.0
4,601	-				+3.0