Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS36785

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS36780 and RR42_RS36785 are separated by 50 nucleotidesRR42_RS36785 and RR42_RS36790 are separated by 137 nucleotidesRR42_RS36790 and RR42_RS36795 are separated by 170 nucleotides RR42_RS36780: RR42_RS36780 - GntR family transcriptional regulator, at 3,705,656 to 3,707,056 _RS36780 RR42_RS36785: RR42_RS36785 - hypothetical protein, at 3,707,107 to 3,707,310 _RS36785 RR42_RS36790: RR42_RS36790 - membrane protein, at 3,707,448 to 3,708,047 _RS36790 RR42_RS36795: RR42_RS36795 - fumarate hydratase, at 3,708,218 to 3,708,718 _RS36795 Position (kb) 3707 3708Strain fitness (log2 ratio) -1 0 1 2at 3706.136 kb on - strand, within RR42_RS36780at 3706.490 kb on + strand, within RR42_RS36780at 3706.502 kb on + strand, within RR42_RS36780at 3706.502 kb on + strand, within RR42_RS36780at 3706.502 kb on + strand, within RR42_RS36780at 3706.503 kb on - strand, within RR42_RS36780at 3706.707 kb on - strand, within RR42_RS36780at 3706.707 kb on - strand, within RR42_RS36780at 3707.077 kb on + strandat 3707.077 kb on + strandat 3707.077 kb on + strandat 3707.078 kb on - strandat 3707.129 kb on + strand, within RR42_RS36785at 3707.130 kb on - strand, within RR42_RS36785at 3707.236 kb on + strand, within RR42_RS36785at 3707.305 kb on + strandat 3707.306 kb on - strandat 3707.306 kb on - strandat 3707.560 kb on - strand, within RR42_RS36790at 3707.561 kb on + strand, within RR42_RS36790at 3707.561 kb on + strand, within RR42_RS36790at 3707.580 kb on + strand, within RR42_RS36790at 3707.581 kb on - strand, within RR42_RS36790at 3707.741 kb on + strand, within RR42_RS36790at 3707.741 kb on + strand, within RR42_RS36790at 3707.741 kb on + strand, within RR42_RS36790at 3707.742 kb on - strand, within RR42_RS36790at 3707.877 kb on + strand, within RR42_RS36790at 3707.878 kb on - strand, within RR42_RS36790at 3707.944 kb on - strand, within RR42_RS36790at 3708.054 kb on + strandat 3708.054 kb on + strandat 3708.054 kb on + strandat 3708.054 kb on + strandat 3708.055 kb on - strandat 3708.164 kb on + strandat 3708.165 kb on - strandat 3708.184 kb on + strandat 3708.203 kb on - strandat 3708.203 kb on - strandat 3708.213 kb on + strandat 3708.214 kb on - strandat 3708.225 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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3,706,136 - RR42_RS36780 0.34 -0.5
3,706,490 + RR42_RS36780 0.60 -0.1
3,706,502 + RR42_RS36780 0.60 +0.3
3,706,502 + RR42_RS36780 0.60 -0.5
3,706,502 + RR42_RS36780 0.60 +0.1
3,706,503 - RR42_RS36780 0.60 -0.8
3,706,707 - RR42_RS36780 0.75 -0.0
3,706,707 - RR42_RS36780 0.75 +0.5
3,707,077 + +0.3
3,707,077 + +0.9
3,707,077 + -0.5
3,707,078 - -0.4
3,707,129 + RR42_RS36785 0.11 -0.6
3,707,130 - RR42_RS36785 0.11 -0.6
3,707,236 + RR42_RS36785 0.63 -1.4
3,707,305 + +0.4
3,707,306 - +0.2
3,707,306 - +0.5
3,707,560 - RR42_RS36790 0.19 +0.8
3,707,561 + RR42_RS36790 0.19 -0.4
3,707,561 + RR42_RS36790 0.19 +2.5
3,707,580 + RR42_RS36790 0.22 -0.0
3,707,581 - RR42_RS36790 0.22 -0.1
3,707,741 + RR42_RS36790 0.49 +0.1
3,707,741 + RR42_RS36790 0.49 -0.1
3,707,741 + RR42_RS36790 0.49 -1.7
3,707,742 - RR42_RS36790 0.49 -0.5
3,707,877 + RR42_RS36790 0.71 +0.3
3,707,878 - RR42_RS36790 0.72 +0.6
3,707,944 - RR42_RS36790 0.83 +0.2
3,708,054 + -0.1
3,708,054 + -0.3
3,708,054 + +0.1
3,708,054 + +0.4
3,708,055 - +0.4
3,708,164 + +0.4
3,708,165 - -0.0
3,708,184 + +0.2
3,708,203 - -0.4
3,708,203 - -0.2
3,708,213 + -0.1
3,708,214 - +1.2
3,708,225 + +0.6

Or see this region's nucleotide sequence