Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS36780 and RR42_RS36785 are separated by 50 nucleotides RR42_RS36785 and RR42_RS36790 are separated by 137 nucleotides RR42_RS36790 and RR42_RS36795 are separated by 170 nucleotides
RR42_RS36780: RR42_RS36780 - GntR family transcriptional regulator, at 3,705,656 to 3,707,056
_RS36780
RR42_RS36785: RR42_RS36785 - hypothetical protein, at 3,707,107 to 3,707,310
_RS36785
RR42_RS36790: RR42_RS36790 - membrane protein, at 3,707,448 to 3,708,047
_RS36790
RR42_RS36795: RR42_RS36795 - fumarate hydratase, at 3,708,218 to 3,708,718
_RS36795
Position (kb)
3707
3708 Strain fitness (log2 ratio)
-1
0
1
2 at 3706.136 kb on - strand, within RR42_RS36780 at 3706.490 kb on + strand, within RR42_RS36780 at 3706.502 kb on + strand, within RR42_RS36780 at 3706.502 kb on + strand, within RR42_RS36780 at 3706.502 kb on + strand, within RR42_RS36780 at 3706.503 kb on - strand, within RR42_RS36780 at 3706.707 kb on - strand, within RR42_RS36780 at 3706.707 kb on - strand, within RR42_RS36780 at 3707.077 kb on + strand at 3707.077 kb on + strand at 3707.077 kb on + strand at 3707.078 kb on - strand at 3707.129 kb on + strand, within RR42_RS36785 at 3707.130 kb on - strand, within RR42_RS36785 at 3707.236 kb on + strand, within RR42_RS36785 at 3707.305 kb on + strand at 3707.306 kb on - strand at 3707.306 kb on - strand at 3707.560 kb on - strand, within RR42_RS36790 at 3707.561 kb on + strand, within RR42_RS36790 at 3707.561 kb on + strand, within RR42_RS36790 at 3707.580 kb on + strand, within RR42_RS36790 at 3707.581 kb on - strand, within RR42_RS36790 at 3707.741 kb on + strand, within RR42_RS36790 at 3707.741 kb on + strand, within RR42_RS36790 at 3707.741 kb on + strand, within RR42_RS36790 at 3707.742 kb on - strand, within RR42_RS36790 at 3707.877 kb on + strand, within RR42_RS36790 at 3707.878 kb on - strand, within RR42_RS36790 at 3707.944 kb on - strand, within RR42_RS36790 at 3708.054 kb on + strand at 3708.054 kb on + strand at 3708.054 kb on + strand at 3708.054 kb on + strand at 3708.055 kb on - strand at 3708.164 kb on + strand at 3708.165 kb on - strand at 3708.184 kb on + strand at 3708.203 kb on - strand at 3708.203 kb on - strand at 3708.213 kb on + strand at 3708.214 kb on - strand at 3708.225 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 3,706,136 - RR42_RS36780 0.34 -0.5 3,706,490 + RR42_RS36780 0.60 -0.1 3,706,502 + RR42_RS36780 0.60 +0.3 3,706,502 + RR42_RS36780 0.60 -0.5 3,706,502 + RR42_RS36780 0.60 +0.1 3,706,503 - RR42_RS36780 0.60 -0.8 3,706,707 - RR42_RS36780 0.75 -0.0 3,706,707 - RR42_RS36780 0.75 +0.5 3,707,077 + +0.3 3,707,077 + +0.9 3,707,077 + -0.5 3,707,078 - -0.4 3,707,129 + RR42_RS36785 0.11 -0.6 3,707,130 - RR42_RS36785 0.11 -0.6 3,707,236 + RR42_RS36785 0.63 -1.4 3,707,305 + +0.4 3,707,306 - +0.2 3,707,306 - +0.5 3,707,560 - RR42_RS36790 0.19 +0.8 3,707,561 + RR42_RS36790 0.19 -0.4 3,707,561 + RR42_RS36790 0.19 +2.5 3,707,580 + RR42_RS36790 0.22 -0.0 3,707,581 - RR42_RS36790 0.22 -0.1 3,707,741 + RR42_RS36790 0.49 +0.1 3,707,741 + RR42_RS36790 0.49 -0.1 3,707,741 + RR42_RS36790 0.49 -1.7 3,707,742 - RR42_RS36790 0.49 -0.5 3,707,877 + RR42_RS36790 0.71 +0.3 3,707,878 - RR42_RS36790 0.72 +0.6 3,707,944 - RR42_RS36790 0.83 +0.2 3,708,054 + -0.1 3,708,054 + -0.3 3,708,054 + +0.1 3,708,054 + +0.4 3,708,055 - +0.4 3,708,164 + +0.4 3,708,165 - -0.0 3,708,184 + +0.2 3,708,203 - -0.4 3,708,203 - -0.2 3,708,213 + -0.1 3,708,214 - +1.2 3,708,225 + +0.6
Or see this region's nucleotide sequence