Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS36610

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS36605 and RR42_RS36610 are separated by 28 nucleotidesRR42_RS36610 and RR42_RS36615 overlap by 4 nucleotidesRR42_RS36615 and RR42_RS36620 are separated by 85 nucleotides RR42_RS36605: RR42_RS36605 - 2-methylcitrate dehydratase, at 3,667,253 to 3,668,635 _RS36605 RR42_RS36610: RR42_RS36610 - host specificity protein, at 3,668,664 to 3,669,542 _RS36610 RR42_RS36615: RR42_RS36615 - acyl-CoA dehydrogenase, at 3,669,539 to 3,670,393 _RS36615 RR42_RS36620: RR42_RS36620 - hypothetical protein, at 3,670,479 to 3,671,453 _RS36620 Position (kb) 3668 3669 3670Strain fitness (log2 ratio) -2 -1 0 1 2at 3667.778 kb on + strand, within RR42_RS36605at 3667.778 kb on + strand, within RR42_RS36605at 3667.778 kb on + strand, within RR42_RS36605at 3667.779 kb on - strand, within RR42_RS36605at 3667.779 kb on - strand, within RR42_RS36605at 3668.633 kb on + strandat 3668.697 kb on - strandat 3668.700 kb on + strandat 3668.701 kb on - strandat 3668.869 kb on - strand, within RR42_RS36610at 3669.043 kb on + strand, within RR42_RS36610at 3669.695 kb on + strand, within RR42_RS36615at 3669.969 kb on + strand, within RR42_RS36615at 3669.969 kb on + strand, within RR42_RS36615at 3669.970 kb on - strand, within RR42_RS36615at 3669.974 kb on + strand, within RR42_RS36615at 3670.118 kb on + strand, within RR42_RS36615at 3670.130 kb on + strand, within RR42_RS36615at 3670.144 kb on - strand, within RR42_RS36615at 3670.529 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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3,667,778 + RR42_RS36605 0.38 +0.4
3,667,778 + RR42_RS36605 0.38 +0.3
3,667,778 + RR42_RS36605 0.38 +1.0
3,667,779 - RR42_RS36605 0.38 -2.6
3,667,779 - RR42_RS36605 0.38 -0.4
3,668,633 + -0.3
3,668,697 - -1.0
3,668,700 + -0.5
3,668,701 - +0.2
3,668,869 - RR42_RS36610 0.23 +0.5
3,669,043 + RR42_RS36610 0.43 +1.2
3,669,695 + RR42_RS36615 0.18 -0.6
3,669,969 + RR42_RS36615 0.50 -0.6
3,669,969 + RR42_RS36615 0.50 -1.9
3,669,970 - RR42_RS36615 0.50 +1.9
3,669,974 + RR42_RS36615 0.51 -1.3
3,670,118 + RR42_RS36615 0.68 +0.2
3,670,130 + RR42_RS36615 0.69 -0.2
3,670,144 - RR42_RS36615 0.71 +1.0
3,670,529 - -0.6

Or see this region's nucleotide sequence