Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS34725 and RR42_RS34730 are separated by 441 nucleotides
RR42_RS34725: RR42_RS34725 - transcriptional regulator, at 3,235,400 to 3,236,002
_RS34725
RR42_RS34730: RR42_RS34730 - chemotaxis protein, at 3,236,444 to 3,238,081
_RS34730
Position (kb)
3235
3236
3237 Strain fitness (log2 ratio)
-1
0
1
2 at 3234.433 kb on - strand at 3234.565 kb on + strand at 3234.565 kb on + strand at 3234.565 kb on + strand at 3234.566 kb on - strand at 3234.566 kb on - strand at 3234.591 kb on + strand at 3234.591 kb on + strand at 3234.591 kb on + strand at 3234.592 kb on - strand at 3234.592 kb on - strand at 3234.649 kb on - strand at 3234.649 kb on - strand at 3234.649 kb on - strand at 3234.721 kb on - strand at 3234.721 kb on - strand at 3234.721 kb on - strand at 3234.827 kb on + strand at 3234.861 kb on + strand at 3234.861 kb on + strand at 3234.861 kb on + strand at 3234.862 kb on - strand at 3234.862 kb on - strand at 3234.889 kb on + strand at 3234.890 kb on - strand at 3234.890 kb on - strand at 3234.937 kb on - strand at 3235.187 kb on + strand at 3235.188 kb on - strand at 3235.188 kb on - strand at 3235.260 kb on + strand at 3235.261 kb on - strand at 3235.372 kb on + strand at 3235.372 kb on + strand at 3235.765 kb on + strand, within RR42_RS34725 at 3235.765 kb on + strand, within RR42_RS34725 at 3235.765 kb on + strand, within RR42_RS34725 at 3235.765 kb on + strand, within RR42_RS34725 at 3235.765 kb on + strand, within RR42_RS34725 at 3235.766 kb on - strand, within RR42_RS34725 at 3235.870 kb on - strand, within RR42_RS34725 at 3235.907 kb on + strand, within RR42_RS34725 at 3235.908 kb on - strand, within RR42_RS34725 at 3235.941 kb on + strand, within RR42_RS34725 at 3235.941 kb on + strand, within RR42_RS34725 at 3235.942 kb on - strand at 3235.942 kb on - strand at 3235.973 kb on + strand at 3235.973 kb on + strand at 3235.978 kb on - strand at 3235.994 kb on + strand at 3236.007 kb on + strand at 3236.007 kb on + strand at 3236.008 kb on - strand at 3236.075 kb on + strand at 3236.076 kb on - strand at 3236.076 kb on - strand at 3236.138 kb on + strand at 3236.138 kb on + strand at 3236.171 kb on - strand at 3236.322 kb on + strand at 3236.323 kb on - strand at 3236.353 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 3,234,433 - +0.3 3,234,565 + +0.4 3,234,565 + -0.2 3,234,565 + +0.9 3,234,566 - +0.1 3,234,566 - -0.2 3,234,591 + +0.0 3,234,591 + -0.5 3,234,591 + +0.1 3,234,592 - -0.2 3,234,592 - -0.2 3,234,649 - -0.3 3,234,649 - +0.5 3,234,649 - -1.0 3,234,721 - -0.6 3,234,721 - +1.0 3,234,721 - +0.4 3,234,827 + -0.0 3,234,861 + +0.0 3,234,861 + -0.3 3,234,861 + +0.7 3,234,862 - -0.1 3,234,862 - +1.0 3,234,889 + +0.3 3,234,890 - +0.2 3,234,890 - -0.0 3,234,937 - +1.6 3,235,187 + +0.2 3,235,188 - -0.9 3,235,188 - -0.1 3,235,260 + +0.3 3,235,261 - -0.5 3,235,372 + -0.4 3,235,372 + +0.0 3,235,765 + RR42_RS34725 0.61 -1.2 3,235,765 + RR42_RS34725 0.61 +0.4 3,235,765 + RR42_RS34725 0.61 +0.2 3,235,765 + RR42_RS34725 0.61 -0.5 3,235,765 + RR42_RS34725 0.61 +1.0 3,235,766 - RR42_RS34725 0.61 -0.1 3,235,870 - RR42_RS34725 0.78 +0.6 3,235,907 + RR42_RS34725 0.84 +0.3 3,235,908 - RR42_RS34725 0.84 +0.6 3,235,941 + RR42_RS34725 0.90 -0.0 3,235,941 + RR42_RS34725 0.90 +0.4 3,235,942 - +1.0 3,235,942 - +0.2 3,235,973 + +1.2 3,235,973 + -0.2 3,235,978 - -0.2 3,235,994 + +0.4 3,236,007 + -0.3 3,236,007 + -0.3 3,236,008 - +0.3 3,236,075 + +2.2 3,236,076 - -0.3 3,236,076 - +0.6 3,236,138 + -0.3 3,236,138 + -0.6 3,236,171 - +0.1 3,236,322 + +0.2 3,236,323 - +0.8 3,236,353 + -0.4
Or see this region's nucleotide sequence