Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS34725

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS34725 and RR42_RS34730 are separated by 441 nucleotides RR42_RS34725: RR42_RS34725 - transcriptional regulator, at 3,235,400 to 3,236,002 _RS34725 RR42_RS34730: RR42_RS34730 - chemotaxis protein, at 3,236,444 to 3,238,081 _RS34730 Position (kb) 3235 3236 3237Strain fitness (log2 ratio) -1 0 1 2at 3234.433 kb on - strandat 3234.565 kb on + strandat 3234.565 kb on + strandat 3234.565 kb on + strandat 3234.566 kb on - strandat 3234.566 kb on - strandat 3234.591 kb on + strandat 3234.591 kb on + strandat 3234.591 kb on + strandat 3234.592 kb on - strandat 3234.592 kb on - strandat 3234.649 kb on - strandat 3234.649 kb on - strandat 3234.649 kb on - strandat 3234.721 kb on - strandat 3234.721 kb on - strandat 3234.721 kb on - strandat 3234.827 kb on + strandat 3234.861 kb on + strandat 3234.861 kb on + strandat 3234.861 kb on + strandat 3234.862 kb on - strandat 3234.862 kb on - strandat 3234.889 kb on + strandat 3234.890 kb on - strandat 3234.890 kb on - strandat 3234.937 kb on - strandat 3235.187 kb on + strandat 3235.188 kb on - strandat 3235.188 kb on - strandat 3235.260 kb on + strandat 3235.261 kb on - strandat 3235.372 kb on + strandat 3235.372 kb on + strandat 3235.765 kb on + strand, within RR42_RS34725at 3235.765 kb on + strand, within RR42_RS34725at 3235.765 kb on + strand, within RR42_RS34725at 3235.765 kb on + strand, within RR42_RS34725at 3235.765 kb on + strand, within RR42_RS34725at 3235.766 kb on - strand, within RR42_RS34725at 3235.870 kb on - strand, within RR42_RS34725at 3235.907 kb on + strand, within RR42_RS34725at 3235.908 kb on - strand, within RR42_RS34725at 3235.941 kb on + strand, within RR42_RS34725at 3235.941 kb on + strand, within RR42_RS34725at 3235.942 kb on - strandat 3235.942 kb on - strandat 3235.973 kb on + strandat 3235.973 kb on + strandat 3235.978 kb on - strandat 3235.994 kb on + strandat 3236.007 kb on + strandat 3236.007 kb on + strandat 3236.008 kb on - strandat 3236.075 kb on + strandat 3236.076 kb on - strandat 3236.076 kb on - strandat 3236.138 kb on + strandat 3236.138 kb on + strandat 3236.171 kb on - strandat 3236.322 kb on + strandat 3236.323 kb on - strandat 3236.353 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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3,234,433 - +0.3
3,234,565 + +0.4
3,234,565 + -0.2
3,234,565 + +0.9
3,234,566 - +0.1
3,234,566 - -0.2
3,234,591 + +0.0
3,234,591 + -0.5
3,234,591 + +0.1
3,234,592 - -0.2
3,234,592 - -0.2
3,234,649 - -0.3
3,234,649 - +0.5
3,234,649 - -1.0
3,234,721 - -0.6
3,234,721 - +1.0
3,234,721 - +0.4
3,234,827 + -0.0
3,234,861 + +0.0
3,234,861 + -0.3
3,234,861 + +0.7
3,234,862 - -0.1
3,234,862 - +1.0
3,234,889 + +0.3
3,234,890 - +0.2
3,234,890 - -0.0
3,234,937 - +1.6
3,235,187 + +0.2
3,235,188 - -0.9
3,235,188 - -0.1
3,235,260 + +0.3
3,235,261 - -0.5
3,235,372 + -0.4
3,235,372 + +0.0
3,235,765 + RR42_RS34725 0.61 -1.2
3,235,765 + RR42_RS34725 0.61 +0.4
3,235,765 + RR42_RS34725 0.61 +0.2
3,235,765 + RR42_RS34725 0.61 -0.5
3,235,765 + RR42_RS34725 0.61 +1.0
3,235,766 - RR42_RS34725 0.61 -0.1
3,235,870 - RR42_RS34725 0.78 +0.6
3,235,907 + RR42_RS34725 0.84 +0.3
3,235,908 - RR42_RS34725 0.84 +0.6
3,235,941 + RR42_RS34725 0.90 -0.0
3,235,941 + RR42_RS34725 0.90 +0.4
3,235,942 - +1.0
3,235,942 - +0.2
3,235,973 + +1.2
3,235,973 + -0.2
3,235,978 - -0.2
3,235,994 + +0.4
3,236,007 + -0.3
3,236,007 + -0.3
3,236,008 - +0.3
3,236,075 + +2.2
3,236,076 - -0.3
3,236,076 - +0.6
3,236,138 + -0.3
3,236,138 + -0.6
3,236,171 - +0.1
3,236,322 + +0.2
3,236,323 - +0.8
3,236,353 + -0.4

Or see this region's nucleotide sequence