Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS32735 and RR42_RS32740 are separated by 44 nucleotides RR42_RS32740 and RR42_RS32745 are separated by 109 nucleotides RR42_RS32745 and RR42_RS32750 are separated by 46 nucleotides
RR42_RS32735: RR42_RS32735 - 3-methylcrotonyl-CoA carboxylase, at 2,738,477 to 2,740,501
_RS32735
RR42_RS32740: RR42_RS32740 - enoyl-CoA hydratase, at 2,740,546 to 2,741,367
_RS32740
RR42_RS32745: RR42_RS32745 - acyl-CoA dehydrogenase, at 2,741,477 to 2,742,637
_RS32745
RR42_RS32750: RR42_RS32750 - acetyl-CoA carboxylase, at 2,742,684 to 2,744,303
_RS32750
Position (kb)
2741
2742
2743 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2740.523 kb on + strand at 2740.524 kb on - strand at 2741.106 kb on - strand, within RR42_RS32740 at 2741.413 kb on - strand at 2741.712 kb on + strand, within RR42_RS32745 at 2741.712 kb on + strand, within RR42_RS32745 at 2741.712 kb on + strand, within RR42_RS32745 at 2741.712 kb on + strand, within RR42_RS32745 at 2741.713 kb on - strand, within RR42_RS32745 at 2741.713 kb on - strand, within RR42_RS32745 at 2741.730 kb on + strand, within RR42_RS32745 at 2741.925 kb on + strand, within RR42_RS32745 at 2741.930 kb on - strand, within RR42_RS32745 at 2741.930 kb on - strand, within RR42_RS32745 at 2742.124 kb on + strand, within RR42_RS32745 at 2742.125 kb on - strand, within RR42_RS32745 at 2742.195 kb on + strand, within RR42_RS32745 at 2742.196 kb on - strand, within RR42_RS32745 at 2742.356 kb on - strand, within RR42_RS32745 at 2742.408 kb on + strand, within RR42_RS32745 at 2742.408 kb on + strand, within RR42_RS32745 at 2742.409 kb on - strand, within RR42_RS32745 at 2742.465 kb on + strand, within RR42_RS32745 at 2742.631 kb on - strand at 2742.631 kb on - strand at 2742.632 kb on + strand at 2742.632 kb on + strand at 2742.633 kb on - strand at 2742.633 kb on - strand at 2743.067 kb on - strand, within RR42_RS32750 at 2743.163 kb on + strand, within RR42_RS32750 at 2743.277 kb on + strand, within RR42_RS32750 at 2743.277 kb on + strand, within RR42_RS32750 at 2743.278 kb on - strand, within RR42_RS32750 at 2743.278 kb on - strand, within RR42_RS32750 at 2743.334 kb on - strand, within RR42_RS32750
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 2,740,523 + -0.0 2,740,524 - +1.3 2,741,106 - RR42_RS32740 0.68 -1.3 2,741,413 - +0.4 2,741,712 + RR42_RS32745 0.20 -0.8 2,741,712 + RR42_RS32745 0.20 +0.3 2,741,712 + RR42_RS32745 0.20 +1.8 2,741,712 + RR42_RS32745 0.20 +1.2 2,741,713 - RR42_RS32745 0.20 +0.8 2,741,713 - RR42_RS32745 0.20 -0.2 2,741,730 + RR42_RS32745 0.22 -0.6 2,741,925 + RR42_RS32745 0.39 +0.4 2,741,930 - RR42_RS32745 0.39 +0.8 2,741,930 - RR42_RS32745 0.39 -0.9 2,742,124 + RR42_RS32745 0.56 +0.6 2,742,125 - RR42_RS32745 0.56 -0.2 2,742,195 + RR42_RS32745 0.62 -0.1 2,742,196 - RR42_RS32745 0.62 +0.4 2,742,356 - RR42_RS32745 0.76 +0.2 2,742,408 + RR42_RS32745 0.80 +0.3 2,742,408 + RR42_RS32745 0.80 +0.2 2,742,409 - RR42_RS32745 0.80 +0.8 2,742,465 + RR42_RS32745 0.85 +0.4 2,742,631 - +0.2 2,742,631 - -0.7 2,742,632 + +0.6 2,742,632 + +0.3 2,742,633 - -1.2 2,742,633 - +0.1 2,743,067 - RR42_RS32750 0.24 -0.6 2,743,163 + RR42_RS32750 0.30 -0.6 2,743,277 + RR42_RS32750 0.37 +0.2 2,743,277 + RR42_RS32750 0.37 +1.1 2,743,278 - RR42_RS32750 0.37 +0.3 2,743,278 - RR42_RS32750 0.37 -2.5 2,743,334 - RR42_RS32750 0.40 -0.9
Or see this region's nucleotide sequence