Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS31750 and RR42_RS31755 are separated by 293 nucleotides RR42_RS31755 and RR42_RS31760 are separated by 208 nucleotides
RR42_RS31750: RR42_RS31750 - IclR family transcriptional regulator, at 2,499,279 to 2,500,046
_RS31750
RR42_RS31755: RR42_RS31755 - short-chain dehydrogenase, at 2,500,340 to 2,501,056
_RS31755
RR42_RS31760: RR42_RS31760 - IclR family transcriptional regulator, at 2,501,265 to 2,503,364
_RS31760
Position (kb)
2500
2501
2502 Strain fitness (log2 ratio)
-2
-1
0
1 at 2499.479 kb on - strand, within RR42_RS31750 at 2499.724 kb on - strand, within RR42_RS31750 at 2499.838 kb on + strand, within RR42_RS31750 at 2499.838 kb on + strand, within RR42_RS31750 at 2500.012 kb on + strand at 2500.078 kb on - strand at 2500.099 kb on - strand at 2500.128 kb on + strand at 2500.129 kb on - strand at 2500.129 kb on - strand at 2500.129 kb on - strand at 2500.129 kb on - strand at 2500.195 kb on + strand at 2500.195 kb on + strand at 2500.195 kb on + strand at 2500.195 kb on + strand at 2500.195 kb on + strand at 2500.195 kb on + strand at 2500.196 kb on - strand at 2500.196 kb on - strand at 2500.196 kb on - strand at 2500.229 kb on + strand at 2500.294 kb on + strand at 2500.295 kb on - strand at 2500.296 kb on + strand at 2500.296 kb on + strand at 2500.296 kb on + strand at 2501.087 kb on - strand at 2501.095 kb on + strand at 2501.187 kb on - strand at 2501.225 kb on - strand at 2501.719 kb on + strand, within RR42_RS31760 at 2501.719 kb on + strand, within RR42_RS31760 at 2501.756 kb on + strand, within RR42_RS31760 at 2501.809 kb on + strand, within RR42_RS31760 at 2501.817 kb on + strand, within RR42_RS31760 at 2501.817 kb on + strand, within RR42_RS31760 at 2501.818 kb on - strand, within RR42_RS31760 at 2501.926 kb on - strand, within RR42_RS31760 at 2501.926 kb on - strand, within RR42_RS31760 at 2501.926 kb on - strand, within RR42_RS31760 at 2501.932 kb on - strand, within RR42_RS31760 at 2501.932 kb on - strand, within RR42_RS31760 at 2501.932 kb on - strand, within RR42_RS31760 at 2501.946 kb on + strand, within RR42_RS31760 at 2501.949 kb on - strand, within RR42_RS31760 at 2502.024 kb on + strand, within RR42_RS31760 at 2502.025 kb on - strand, within RR42_RS31760
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 2,499,479 - RR42_RS31750 0.26 +1.3 2,499,724 - RR42_RS31750 0.58 +0.9 2,499,838 + RR42_RS31750 0.73 +0.2 2,499,838 + RR42_RS31750 0.73 +0.1 2,500,012 + +0.1 2,500,078 - +0.4 2,500,099 - +1.1 2,500,128 + -0.6 2,500,129 - +0.1 2,500,129 - -0.1 2,500,129 - -0.2 2,500,129 - +0.5 2,500,195 + +0.0 2,500,195 + +0.2 2,500,195 + -0.2 2,500,195 + +0.3 2,500,195 + +0.0 2,500,195 + +0.6 2,500,196 - -1.3 2,500,196 - +0.1 2,500,196 - -0.4 2,500,229 + -0.4 2,500,294 + -0.4 2,500,295 - +0.9 2,500,296 + +1.3 2,500,296 + +0.2 2,500,296 + +0.2 2,501,087 - -0.9 2,501,095 + -0.2 2,501,187 - -0.7 2,501,225 - +0.0 2,501,719 + RR42_RS31760 0.22 -0.1 2,501,719 + RR42_RS31760 0.22 +0.1 2,501,756 + RR42_RS31760 0.23 -0.6 2,501,809 + RR42_RS31760 0.26 -0.8 2,501,817 + RR42_RS31760 0.26 -0.4 2,501,817 + RR42_RS31760 0.26 -0.5 2,501,818 - RR42_RS31760 0.26 -0.4 2,501,926 - RR42_RS31760 0.31 +0.9 2,501,926 - RR42_RS31760 0.31 -0.4 2,501,926 - RR42_RS31760 0.31 +0.6 2,501,932 - RR42_RS31760 0.32 +0.5 2,501,932 - RR42_RS31760 0.32 -2.2 2,501,932 - RR42_RS31760 0.32 -1.1 2,501,946 + RR42_RS31760 0.32 +1.5 2,501,949 - RR42_RS31760 0.33 +0.2 2,502,024 + RR42_RS31760 0.36 -0.1 2,502,025 - RR42_RS31760 0.36 -0.4
Or see this region's nucleotide sequence