Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS31645

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS31640 and RR42_RS31645 are separated by 301 nucleotides RR42_RS31640: RR42_RS31640 - sulfurtransferase, at 2,477,071 to 2,479,317 _RS31640 RR42_RS31645: RR42_RS31645 - cysteine dioxygenase, at 2,479,619 to 2,480,221 _RS31645 Position (kb) 2479 2480 2481Strain fitness (log2 ratio) -1 0 1at 2478.732 kb on - strand, within RR42_RS31640at 2478.732 kb on - strand, within RR42_RS31640at 2478.871 kb on - strand, within RR42_RS31640at 2479.211 kb on + strandat 2479.277 kb on - strandat 2479.414 kb on - strandat 2479.414 kb on - strandat 2479.414 kb on - strandat 2479.564 kb on - strandat 2479.895 kb on - strand, within RR42_RS31645at 2480.063 kb on - strand, within RR42_RS31645at 2480.063 kb on - strand, within RR42_RS31645at 2480.063 kb on - strand, within RR42_RS31645at 2480.361 kb on + strandat 2480.362 kb on - strandat 2480.362 kb on - strandat 2481.110 kb on + strandat 2481.110 kb on + strandat 2481.110 kb on + strandat 2481.210 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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2,478,732 - RR42_RS31640 0.74 -0.0
2,478,732 - RR42_RS31640 0.74 -0.5
2,478,871 - RR42_RS31640 0.80 +0.5
2,479,211 + -0.6
2,479,277 - +1.4
2,479,414 - +0.2
2,479,414 - -0.6
2,479,414 - -1.0
2,479,564 - +0.2
2,479,895 - RR42_RS31645 0.46 -1.2
2,480,063 - RR42_RS31645 0.74 -1.4
2,480,063 - RR42_RS31645 0.74 -1.0
2,480,063 - RR42_RS31645 0.74 -0.1
2,480,361 + -0.6
2,480,362 - +0.0
2,480,362 - +0.2
2,481,110 + -0.0
2,481,110 + -1.6
2,481,110 + -0.5
2,481,210 - -0.3

Or see this region's nucleotide sequence