Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS28465 and RR42_RS28470 are separated by 7 nucleotides RR42_RS28470 and RR42_RS28475 are separated by 249 nucleotides RR42_RS28475 and RR42_RS28480 are separated by 27 nucleotides RR42_RS28480 and RR42_RS28485 are separated by 65 nucleotides
RR42_RS28465: RR42_RS28465 - permease, at 1,745,766 to 1,746,857
_RS28465
RR42_RS28470: RR42_RS28470 - hypothetical protein, at 1,746,865 to 1,747,230
_RS28470
RR42_RS28475: RR42_RS28475 - dioxygenase, at 1,747,480 to 1,748,283
_RS28475
RR42_RS28480: RR42_RS28480 - DSBA oxidoreductase, at 1,748,311 to 1,748,904
_RS28480
RR42_RS28485: RR42_RS28485 - short-chain dehydrogenase, at 1,748,970 to 1,749,698
_RS28485
Position (kb)
1747
1748
1749 Strain fitness (log2 ratio)
-2
-1
0
1 at 1746.543 kb on + strand, within RR42_RS28465 at 1746.543 kb on + strand, within RR42_RS28465 at 1746.867 kb on - strand at 1746.867 kb on - strand at 1746.882 kb on - strand at 1747.315 kb on + strand at 1747.315 kb on + strand at 1747.354 kb on + strand at 1747.404 kb on + strand at 1747.492 kb on - strand at 1747.669 kb on + strand, within RR42_RS28475 at 1747.765 kb on + strand, within RR42_RS28475 at 1747.792 kb on + strand, within RR42_RS28475 at 1747.792 kb on + strand, within RR42_RS28475 at 1747.792 kb on + strand, within RR42_RS28475 at 1747.792 kb on + strand, within RR42_RS28475 at 1747.792 kb on + strand, within RR42_RS28475 at 1747.813 kb on + strand, within RR42_RS28475 at 1747.814 kb on - strand, within RR42_RS28475 at 1747.969 kb on - strand, within RR42_RS28475 at 1748.146 kb on + strand, within RR42_RS28475 at 1748.146 kb on + strand, within RR42_RS28475 at 1748.580 kb on - strand, within RR42_RS28480 at 1748.800 kb on + strand, within RR42_RS28480 at 1748.855 kb on + strand at 1748.856 kb on - strand at 1749.046 kb on + strand, within RR42_RS28485 at 1749.046 kb on + strand, within RR42_RS28485
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 1,746,543 + RR42_RS28465 0.71 -2.1 1,746,543 + RR42_RS28465 0.71 -0.5 1,746,867 - +0.7 1,746,867 - +0.6 1,746,882 - -0.2 1,747,315 + +1.0 1,747,315 + -0.6 1,747,354 + +0.5 1,747,404 + +0.1 1,747,492 - -0.4 1,747,669 + RR42_RS28475 0.24 +0.3 1,747,765 + RR42_RS28475 0.35 +0.2 1,747,792 + RR42_RS28475 0.39 +0.9 1,747,792 + RR42_RS28475 0.39 +0.4 1,747,792 + RR42_RS28475 0.39 +0.6 1,747,792 + RR42_RS28475 0.39 +0.7 1,747,792 + RR42_RS28475 0.39 +0.4 1,747,813 + RR42_RS28475 0.41 -0.6 1,747,814 - RR42_RS28475 0.42 +0.4 1,747,969 - RR42_RS28475 0.61 +0.6 1,748,146 + RR42_RS28475 0.83 +0.4 1,748,146 + RR42_RS28475 0.83 +1.1 1,748,580 - RR42_RS28480 0.45 +0.8 1,748,800 + RR42_RS28480 0.82 -1.0 1,748,855 + -0.2 1,748,856 - +0.2 1,749,046 + RR42_RS28485 0.10 +0.2 1,749,046 + RR42_RS28485 0.10 -0.0
Or see this region's nucleotide sequence