Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS28100 and RR42_RS28105 overlap by 4 nucleotides RR42_RS28105 and RR42_RS28110 are separated by 32 nucleotides RR42_RS28110 and RR42_RS28115 are separated by 126 nucleotides
RR42_RS28100: RR42_RS28100 - carbon-phosphorus lyase, at 1,663,599 to 1,664,510
_RS28100
RR42_RS28105: RR42_RS28105 - phosphonate C-P lyase system protein PhnK, at 1,664,507 to 1,665,295
_RS28105
RR42_RS28110: RR42_RS28110 - phosphonate ABC transporter ATPase, at 1,665,328 to 1,666,017
_RS28110
RR42_RS28115: RR42_RS28115 - phosphonate metabolism protein PhnM, at 1,666,144 to 1,667,385
_RS28115
Position (kb)
1665
1666
1667 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1664.370 kb on + strand, within RR42_RS28100 at 1664.371 kb on - strand, within RR42_RS28100 at 1664.433 kb on + strand at 1665.313 kb on + strand at 1665.508 kb on + strand, within RR42_RS28110 at 1665.509 kb on - strand, within RR42_RS28110 at 1665.517 kb on + strand, within RR42_RS28110 at 1665.517 kb on + strand, within RR42_RS28110 at 1665.517 kb on + strand, within RR42_RS28110 at 1665.626 kb on - strand, within RR42_RS28110 at 1665.638 kb on + strand, within RR42_RS28110 at 1666.157 kb on - strand at 1666.442 kb on - strand, within RR42_RS28115 at 1666.691 kb on - strand, within RR42_RS28115 at 1666.699 kb on + strand, within RR42_RS28115 at 1666.700 kb on - strand, within RR42_RS28115 at 1666.863 kb on + strand, within RR42_RS28115 at 1666.864 kb on - strand, within RR42_RS28115 at 1666.958 kb on + strand, within RR42_RS28115 at 1666.958 kb on + strand, within RR42_RS28115 at 1666.958 kb on + strand, within RR42_RS28115 at 1666.958 kb on + strand, within RR42_RS28115 at 1666.958 kb on + strand, within RR42_RS28115 at 1666.959 kb on - strand, within RR42_RS28115
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 1,664,370 + RR42_RS28100 0.85 -0.5 1,664,371 - RR42_RS28100 0.85 -0.5 1,664,433 + +0.3 1,665,313 + -0.6 1,665,508 + RR42_RS28110 0.26 +0.0 1,665,509 - RR42_RS28110 0.26 -1.7 1,665,517 + RR42_RS28110 0.27 -2.0 1,665,517 + RR42_RS28110 0.27 +1.1 1,665,517 + RR42_RS28110 0.27 +1.3 1,665,626 - RR42_RS28110 0.43 +0.8 1,665,638 + RR42_RS28110 0.45 +0.6 1,666,157 - -0.3 1,666,442 - RR42_RS28115 0.24 -1.4 1,666,691 - RR42_RS28115 0.44 +0.1 1,666,699 + RR42_RS28115 0.45 +0.3 1,666,700 - RR42_RS28115 0.45 +0.8 1,666,863 + RR42_RS28115 0.58 -0.5 1,666,864 - RR42_RS28115 0.58 +1.9 1,666,958 + RR42_RS28115 0.66 -1.7 1,666,958 + RR42_RS28115 0.66 +0.4 1,666,958 + RR42_RS28115 0.66 +0.1 1,666,958 + RR42_RS28115 0.66 -0.2 1,666,958 + RR42_RS28115 0.66 +1.1 1,666,959 - RR42_RS28115 0.66 +0.2
Or see this region's nucleotide sequence