Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS27080

Experiment: L-Serine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS27075 and RR42_RS27080 are separated by 21 nucleotidesRR42_RS27080 and RR42_RS27085 are separated by 248 nucleotides RR42_RS27075: RR42_RS27075 - MFS transporter, at 1,427,209 to 1,428,441 _RS27075 RR42_RS27080: RR42_RS27080 - hypothetical protein, at 1,428,463 to 1,428,747 _RS27080 RR42_RS27085: RR42_RS27085 - hypothetical protein, at 1,428,996 to 1,429,961 _RS27085 Position (kb) 1428 1429Strain fitness (log2 ratio) -2 -1 0 1at 1427.691 kb on - strand, within RR42_RS27075at 1427.693 kb on + strand, within RR42_RS27075at 1427.693 kb on + strand, within RR42_RS27075at 1427.694 kb on - strand, within RR42_RS27075at 1427.694 kb on - strandat 1427.694 kb on - strand, within RR42_RS27075at 1427.766 kb on + strand, within RR42_RS27075at 1427.766 kb on + strand, within RR42_RS27075at 1427.945 kb on + strand, within RR42_RS27075at 1427.945 kb on + strand, within RR42_RS27075at 1427.946 kb on - strand, within RR42_RS27075at 1428.335 kb on + strandat 1428.558 kb on + strand, within RR42_RS27080at 1428.712 kb on + strand, within RR42_RS27080at 1428.757 kb on + strandat 1428.757 kb on + strandat 1428.835 kb on + strandat 1428.836 kb on - strandat 1429.081 kb on - strandat 1429.287 kb on + strand, within RR42_RS27085at 1429.338 kb on + strand, within RR42_RS27085at 1429.338 kb on + strand, within RR42_RS27085at 1429.338 kb on + strand, within RR42_RS27085at 1429.339 kb on - strand, within RR42_RS27085at 1429.462 kb on - strand, within RR42_RS27085

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
remove
1,427,691 - RR42_RS27075 0.39 +0.4
1,427,693 + RR42_RS27075 0.39 -0.5
1,427,693 + RR42_RS27075 0.39 +1.7
1,427,694 - RR42_RS27075 0.39 +1.7
1,427,694 - +1.7
1,427,694 - RR42_RS27075 0.39 -0.3
1,427,766 + RR42_RS27075 0.45 +0.5
1,427,766 + RR42_RS27075 0.45 +0.1
1,427,945 + RR42_RS27075 0.60 -0.6
1,427,945 + RR42_RS27075 0.60 -0.3
1,427,946 - RR42_RS27075 0.60 -1.7
1,428,335 + -0.5
1,428,558 + RR42_RS27080 0.33 +1.0
1,428,712 + RR42_RS27080 0.87 +0.1
1,428,757 + +0.3
1,428,757 + -0.1
1,428,835 + +1.1
1,428,836 - +0.3
1,429,081 - +0.3
1,429,287 + RR42_RS27085 0.30 -0.6
1,429,338 + RR42_RS27085 0.35 -0.2
1,429,338 + RR42_RS27085 0.35 -1.8
1,429,338 + RR42_RS27085 0.35 +0.4
1,429,339 - RR42_RS27085 0.36 -0.4
1,429,462 - RR42_RS27085 0.48 -0.9

Or see this region's nucleotide sequence