Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS26315

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS26310 and RR42_RS26315 are separated by 11 nucleotidesRR42_RS26315 and RR42_RS26320 are separated by 163 nucleotides RR42_RS26310: RR42_RS26310 - microcystin LR degradation protein MlrC, at 1,262,187 to 1,263,644 _RS26310 RR42_RS26315: RR42_RS26315 - MFS transporter, at 1,263,656 to 1,264,642 _RS26315 RR42_RS26320: RR42_RS26320 - LysR family transcriptional regulator, at 1,264,806 to 1,265,723 _RS26320 Position (kb) 1263 1264 1265Strain fitness (log2 ratio) -2 -1 0 1at 1262.905 kb on + strand, within RR42_RS26310at 1263.016 kb on + strand, within RR42_RS26310at 1263.016 kb on + strand, within RR42_RS26310at 1263.016 kb on + strand, within RR42_RS26310at 1263.016 kb on + strand, within RR42_RS26310at 1263.016 kb on + strand, within RR42_RS26310at 1263.016 kb on + strand, within RR42_RS26310at 1263.016 kb on + strand, within RR42_RS26310at 1263.016 kb on + strand, within RR42_RS26310at 1263.017 kb on - strand, within RR42_RS26310at 1263.017 kb on - strand, within RR42_RS26310at 1263.017 kb on - strand, within RR42_RS26310at 1263.117 kb on + strand, within RR42_RS26310at 1263.117 kb on + strand, within RR42_RS26310at 1263.172 kb on + strand, within RR42_RS26310at 1263.173 kb on - strand, within RR42_RS26310at 1263.406 kb on + strand, within RR42_RS26310at 1263.407 kb on - strand, within RR42_RS26310at 1263.557 kb on - strandat 1263.632 kb on + strandat 1263.658 kb on - strandat 1263.829 kb on + strand, within RR42_RS26315at 1263.830 kb on - strand, within RR42_RS26315at 1263.873 kb on + strand, within RR42_RS26315at 1263.874 kb on - strand, within RR42_RS26315at 1264.084 kb on - strand, within RR42_RS26315at 1264.201 kb on - strand, within RR42_RS26315at 1264.201 kb on - strand, within RR42_RS26315at 1264.201 kb on - strand, within RR42_RS26315at 1264.201 kb on - strand, within RR42_RS26315at 1264.323 kb on + strand, within RR42_RS26315at 1264.359 kb on - strand, within RR42_RS26315at 1264.359 kb on - strand, within RR42_RS26315at 1264.371 kb on + strand, within RR42_RS26315at 1264.371 kb on + strand, within RR42_RS26315at 1264.371 kb on + strand, within RR42_RS26315at 1264.372 kb on - strand, within RR42_RS26315at 1264.521 kb on + strand, within RR42_RS26315at 1264.555 kb on - strandat 1264.693 kb on + strandat 1264.694 kb on - strandat 1264.723 kb on + strandat 1264.723 kb on + strandat 1264.724 kb on - strandat 1264.839 kb on + strandat 1264.945 kb on + strand, within RR42_RS26320at 1264.946 kb on - strand, within RR42_RS26320at 1265.166 kb on + strand, within RR42_RS26320at 1265.509 kb on - strand, within RR42_RS26320

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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1,262,905 + RR42_RS26310 0.49 -1.2
1,263,016 + RR42_RS26310 0.57 +0.9
1,263,016 + RR42_RS26310 0.57 -0.6
1,263,016 + RR42_RS26310 0.57 +0.6
1,263,016 + RR42_RS26310 0.57 -2.4
1,263,016 + RR42_RS26310 0.57 +0.1
1,263,016 + RR42_RS26310 0.57 -0.3
1,263,016 + RR42_RS26310 0.57 -2.2
1,263,016 + RR42_RS26310 0.57 +0.1
1,263,017 - RR42_RS26310 0.57 -0.2
1,263,017 - RR42_RS26310 0.57 +0.0
1,263,017 - RR42_RS26310 0.57 -0.3
1,263,117 + RR42_RS26310 0.64 +0.3
1,263,117 + RR42_RS26310 0.64 +0.3
1,263,172 + RR42_RS26310 0.68 +0.8
1,263,173 - RR42_RS26310 0.68 -0.4
1,263,406 + RR42_RS26310 0.84 +1.2
1,263,407 - RR42_RS26310 0.84 -0.6
1,263,557 - +0.1
1,263,632 + +0.4
1,263,658 - +0.5
1,263,829 + RR42_RS26315 0.18 -0.1
1,263,830 - RR42_RS26315 0.18 +0.1
1,263,873 + RR42_RS26315 0.22 -0.3
1,263,874 - RR42_RS26315 0.22 -2.0
1,264,084 - RR42_RS26315 0.43 -0.5
1,264,201 - RR42_RS26315 0.55 -0.6
1,264,201 - RR42_RS26315 0.55 +0.2
1,264,201 - RR42_RS26315 0.55 +0.0
1,264,201 - RR42_RS26315 0.55 -0.0
1,264,323 + RR42_RS26315 0.68 +0.3
1,264,359 - RR42_RS26315 0.71 +0.5
1,264,359 - RR42_RS26315 0.71 +1.0
1,264,371 + RR42_RS26315 0.72 +1.2
1,264,371 + RR42_RS26315 0.72 +0.1
1,264,371 + RR42_RS26315 0.72 +0.1
1,264,372 - RR42_RS26315 0.73 -0.6
1,264,521 + RR42_RS26315 0.88 +0.4
1,264,555 - +0.9
1,264,693 + +0.2
1,264,694 - +1.4
1,264,723 + -0.2
1,264,723 + -0.2
1,264,724 - -0.0
1,264,839 + +0.3
1,264,945 + RR42_RS26320 0.15 +0.2
1,264,946 - RR42_RS26320 0.15 +0.3
1,265,166 + RR42_RS26320 0.39 -1.0
1,265,509 - RR42_RS26320 0.77 +0.7

Or see this region's nucleotide sequence