Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS26115

Experiment: L-Serine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS26110 and RR42_RS26115 are separated by 114 nucleotidesRR42_RS26115 and RR42_RS26120 are separated by 13 nucleotides RR42_RS26110: RR42_RS26110 - malic enzyme, at 1,208,024 to 1,210,318 _RS26110 RR42_RS26115: RR42_RS26115 - dihydrolipoamide dehydrogenase, at 1,210,433 to 1,212,202 _RS26115 RR42_RS26120: RR42_RS26120 - dihydrolipoamide acetyltransferase, at 1,212,216 to 1,213,838 _RS26120 Position (kb) 1210 1211 1212 1213Strain fitness (log2 ratio) -1 0 1at 1209.601 kb on - strand, within RR42_RS26110at 1209.642 kb on + strand, within RR42_RS26110at 1209.642 kb on + strand, within RR42_RS26110at 1209.643 kb on - strand, within RR42_RS26110at 1209.885 kb on + strand, within RR42_RS26110at 1209.885 kb on + strand, within RR42_RS26110at 1210.578 kb on - strandat 1210.797 kb on + strand, within RR42_RS26115at 1210.830 kb on + strand, within RR42_RS26115at 1210.830 kb on + strand, within RR42_RS26115at 1210.970 kb on - strand, within RR42_RS26115at 1211.061 kb on + strand, within RR42_RS26115at 1211.061 kb on + strand, within RR42_RS26115at 1211.062 kb on - strand, within RR42_RS26115at 1211.484 kb on + strand, within RR42_RS26115at 1212.004 kb on + strand, within RR42_RS26115at 1212.387 kb on + strand, within RR42_RS26120at 1212.388 kb on - strand, within RR42_RS26120at 1212.632 kb on - strand, within RR42_RS26120at 1212.632 kb on - strand, within RR42_RS26120at 1212.632 kb on - strand, within RR42_RS26120at 1212.632 kb on - strand, within RR42_RS26120at 1212.635 kb on - strand, within RR42_RS26120at 1212.801 kb on - strand, within RR42_RS26120at 1212.837 kb on + strand, within RR42_RS26120at 1212.838 kb on - strand, within RR42_RS26120at 1213.129 kb on + strand, within RR42_RS26120

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
remove
1,209,601 - RR42_RS26110 0.69 -0.2
1,209,642 + RR42_RS26110 0.71 -0.7
1,209,642 + RR42_RS26110 0.71 +0.1
1,209,643 - RR42_RS26110 0.71 -0.3
1,209,885 + RR42_RS26110 0.81 -0.6
1,209,885 + RR42_RS26110 0.81 -0.3
1,210,578 - -0.2
1,210,797 + RR42_RS26115 0.21 -0.5
1,210,830 + RR42_RS26115 0.22 -0.8
1,210,830 + RR42_RS26115 0.22 -0.0
1,210,970 - RR42_RS26115 0.30 -1.1
1,211,061 + RR42_RS26115 0.35 -0.8
1,211,061 + RR42_RS26115 0.35 +1.3
1,211,062 - RR42_RS26115 0.36 -1.6
1,211,484 + RR42_RS26115 0.59 -0.3
1,212,004 + RR42_RS26115 0.89 -0.8
1,212,387 + RR42_RS26120 0.11 -0.4
1,212,388 - RR42_RS26120 0.11 +0.6
1,212,632 - RR42_RS26120 0.26 -0.1
1,212,632 - RR42_RS26120 0.26 +0.2
1,212,632 - RR42_RS26120 0.26 -0.3
1,212,632 - RR42_RS26120 0.26 -0.5
1,212,635 - RR42_RS26120 0.26 -1.7
1,212,801 - RR42_RS26120 0.36 -0.3
1,212,837 + RR42_RS26120 0.38 -0.4
1,212,838 - RR42_RS26120 0.38 -1.1
1,213,129 + RR42_RS26120 0.56 -0.9

Or see this region's nucleotide sequence