Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS26075 and RR42_RS26080 are separated by 85 nucleotides RR42_RS26080 and RR42_RS26085 are separated by 66 nucleotides RR42_RS26085 and RR42_RS26090 are separated by 54 nucleotides
RR42_RS26075: RR42_RS26075 - cytochrome D ubiquinol oxidase subunit I, at 1,199,317 to 1,200,627
_RS26075
RR42_RS26080: RR42_RS26080 - hypothetical protein, at 1,200,713 to 1,201,372
_RS26080
RR42_RS26085: RR42_RS26085 - acetoacetyl-CoA reductase, at 1,201,439 to 1,202,185
_RS26085
RR42_RS26090: RR42_RS26090 - acetyl-CoA acetyltransferase, at 1,202,240 to 1,203,415
_RS26090
Position (kb)
1201
1202
1203 Strain fitness (log2 ratio)
-2
-1
0
1 at 1200.465 kb on - strand, within RR42_RS26075 at 1200.573 kb on + strand at 1200.573 kb on + strand at 1200.967 kb on + strand, within RR42_RS26080 at 1201.372 kb on + strand at 1201.372 kb on + strand at 1201.372 kb on + strand at 1201.373 kb on - strand at 1201.373 kb on - strand at 1201.398 kb on - strand at 1201.398 kb on - strand at 1201.398 kb on - strand at 1201.513 kb on - strand at 1201.694 kb on - strand, within RR42_RS26085 at 1201.726 kb on - strand, within RR42_RS26085 at 1201.726 kb on - strand, within RR42_RS26085 at 1202.025 kb on + strand, within RR42_RS26085 at 1202.168 kb on + strand at 1202.169 kb on - strand at 1202.583 kb on + strand, within RR42_RS26090 at 1202.584 kb on - strand, within RR42_RS26090 at 1202.584 kb on - strand, within RR42_RS26090 at 1202.914 kb on - strand, within RR42_RS26090 at 1202.952 kb on + strand, within RR42_RS26090 at 1202.952 kb on + strand, within RR42_RS26090
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 1,200,465 - RR42_RS26075 0.88 +0.2 1,200,573 + -0.1 1,200,573 + -0.2 1,200,967 + RR42_RS26080 0.38 -0.7 1,201,372 + -1.5 1,201,372 + -1.7 1,201,372 + -0.4 1,201,373 - -0.1 1,201,373 - +0.7 1,201,398 - +0.7 1,201,398 - +0.9 1,201,398 - -2.4 1,201,513 - +0.6 1,201,694 - RR42_RS26085 0.34 -0.9 1,201,726 - RR42_RS26085 0.38 +0.6 1,201,726 - RR42_RS26085 0.38 -0.2 1,202,025 + RR42_RS26085 0.78 -1.2 1,202,168 + +0.4 1,202,169 - -0.2 1,202,583 + RR42_RS26090 0.29 -0.2 1,202,584 - RR42_RS26090 0.29 -1.4 1,202,584 - RR42_RS26090 0.29 -0.7 1,202,914 - RR42_RS26090 0.57 -0.2 1,202,952 + RR42_RS26090 0.61 -0.1 1,202,952 + RR42_RS26090 0.61 -0.2
Or see this region's nucleotide sequence