Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23905 and RR42_RS23910 overlap by 4 nucleotides RR42_RS23910 and RR42_RS23915 are separated by 50 nucleotides RR42_RS23915 and RR42_RS23920 overlap by 1 nucleotides
RR42_RS23905: RR42_RS23905 - hypothetical protein, at 689,204 to 691,897
_RS23905
RR42_RS23910: RR42_RS23910 - hypothetical protein, at 691,894 to 692,343
_RS23910
RR42_RS23915: RR42_RS23915 - hypothetical protein, at 692,394 to 692,870
_RS23915
RR42_RS23920: RR42_RS23920 - hypothetical protein, at 692,870 to 693,496
_RS23920
Position (kb) 691
692
693 Strain fitness (log2 ratio) -2
-1
0
1 at 691.185 kb on - strand, within RR42_RS23905 at 691.257 kb on + strand, within RR42_RS23905 at 691.325 kb on + strand, within RR42_RS23905 at 691.326 kb on - strand, within RR42_RS23905 at 691.326 kb on - strand, within RR42_RS23905 at 691.440 kb on - strand, within RR42_RS23905 at 691.484 kb on + strand, within RR42_RS23905 at 691.484 kb on + strand, within RR42_RS23905 at 691.485 kb on - strand, within RR42_RS23905 at 691.601 kb on + strand, within RR42_RS23905 at 691.602 kb on - strand, within RR42_RS23905 at 691.602 kb on - strand, within RR42_RS23905 at 691.602 kb on - strand, within RR42_RS23905 at 691.844 kb on + strand at 691.845 kb on - strand at 691.877 kb on + strand at 691.878 kb on - strand at 691.878 kb on - strand at 692.189 kb on + strand, within RR42_RS23910 at 692.189 kb on + strand, within RR42_RS23910 at 692.218 kb on + strand, within RR42_RS23910 at 692.453 kb on - strand, within RR42_RS23915 at 692.453 kb on - strand, within RR42_RS23915 at 692.668 kb on - strand, within RR42_RS23915 at 692.901 kb on + strand at 692.901 kb on + strand at 692.905 kb on - strand at 692.909 kb on - strand at 692.964 kb on - strand, within RR42_RS23920 at 693.138 kb on - strand, within RR42_RS23920
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 691,185 - RR42_RS23905 0.74 -0.4 691,257 + RR42_RS23905 0.76 -0.7 691,325 + RR42_RS23905 0.79 +0.5 691,326 - RR42_RS23905 0.79 +1.4 691,326 - RR42_RS23905 0.79 -0.2 691,440 - RR42_RS23905 0.83 +0.5 691,484 + RR42_RS23905 0.85 +0.0 691,484 + RR42_RS23905 0.85 -0.2 691,485 - RR42_RS23905 0.85 -0.0 691,601 + RR42_RS23905 0.89 +1.0 691,602 - RR42_RS23905 0.89 -0.2 691,602 - RR42_RS23905 0.89 -0.1 691,602 - RR42_RS23905 0.89 -1.0 691,844 + +0.2 691,845 - -0.1 691,877 + -0.3 691,878 - +1.1 691,878 - -0.1 692,189 + RR42_RS23910 0.66 +0.6 692,189 + RR42_RS23910 0.66 +0.8 692,218 + RR42_RS23910 0.72 +0.5 692,453 - RR42_RS23915 0.12 +0.4 692,453 - RR42_RS23915 0.12 -0.2 692,668 - RR42_RS23915 0.57 -0.6 692,901 + -0.3 692,901 + +0.9 692,905 - -1.8 692,909 - -0.6 692,964 - RR42_RS23920 0.15 -0.2 693,138 - RR42_RS23920 0.43 +0.1
Or see this region's nucleotide sequence