Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23570 and RR42_RS23575 are separated by 510 nucleotides RR42_RS23575 and RR42_RS23580 are separated by 516 nucleotides
RR42_RS23570: RR42_RS23570 - flagellar M-ring protein FliF, at 613,351 to 615,060
_RS23570
RR42_RS23575: RR42_RS23575 - flagellar hook-basal body protein FliE, at 615,571 to 615,891
_RS23575
RR42_RS23580: RR42_RS23580 - hypothetical protein, at 616,408 to 617,061
_RS23580
Position (kb) 615
616 Strain fitness (log2 ratio) -2
-1
0
1 at 614.676 kb on - strand, within RR42_RS23570 at 614.676 kb on - strand, within RR42_RS23570 at 614.840 kb on + strand, within RR42_RS23570 at 614.906 kb on + strand at 614.906 kb on + strand at 614.907 kb on - strand at 614.907 kb on - strand at 614.918 kb on + strand at 614.919 kb on - strand at 614.919 kb on - strand at 615.182 kb on + strand at 615.182 kb on + strand at 615.183 kb on - strand at 615.210 kb on + strand at 615.210 kb on + strand at 615.223 kb on - strand at 615.262 kb on - strand at 615.329 kb on - strand at 615.380 kb on + strand at 615.421 kb on + strand at 615.492 kb on + strand at 615.492 kb on + strand at 615.493 kb on - strand at 615.576 kb on + strand at 615.576 kb on + strand at 615.576 kb on + strand at 615.577 kb on - strand at 615.577 kb on - strand at 615.810 kb on + strand, within RR42_RS23575 at 615.811 kb on - strand, within RR42_RS23575 at 615.811 kb on - strand, within RR42_RS23575 at 615.879 kb on + strand at 615.880 kb on - strand at 615.880 kb on - strand at 615.880 kb on - strand at 615.880 kb on - strand at 615.880 kb on - strand at 616.255 kb on + strand at 616.255 kb on + strand at 616.256 kb on - strand at 616.410 kb on - strand at 616.410 kb on - strand at 616.422 kb on - strand at 616.482 kb on - strand, within RR42_RS23580 at 616.586 kb on + strand, within RR42_RS23580 at 616.636 kb on + strand, within RR42_RS23580 at 616.664 kb on + strand, within RR42_RS23580 at 616.664 kb on + strand, within RR42_RS23580 at 616.665 kb on - strand, within RR42_RS23580 at 616.674 kb on - strand, within RR42_RS23580 at 616.742 kb on + strand, within RR42_RS23580 at 616.742 kb on + strand, within RR42_RS23580 at 616.838 kb on + strand, within RR42_RS23580 at 616.838 kb on + strand, within RR42_RS23580 at 616.838 kb on + strand, within RR42_RS23580 at 616.839 kb on - strand, within RR42_RS23580 at 616.839 kb on - strand, within RR42_RS23580 at 616.841 kb on + strand, within RR42_RS23580 at 616.841 kb on + strand, within RR42_RS23580 at 616.841 kb on + strand, within RR42_RS23580 at 616.847 kb on + strand, within RR42_RS23580 at 616.847 kb on + strand, within RR42_RS23580 at 616.848 kb on - strand, within RR42_RS23580 at 616.848 kb on - strand, within RR42_RS23580 at 616.848 kb on - strand, within RR42_RS23580 at 616.848 kb on - strand, within RR42_RS23580 at 616.856 kb on + strand, within RR42_RS23580
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 614,676 - RR42_RS23570 0.77 +0.1 614,676 - RR42_RS23570 0.77 -0.3 614,840 + RR42_RS23570 0.87 -0.4 614,906 + -0.8 614,906 + -1.0 614,907 - -0.5 614,907 - -1.3 614,918 + -0.0 614,919 - -0.1 614,919 - -2.0 615,182 + -0.0 615,182 + +0.1 615,183 - -0.4 615,210 + -0.1 615,210 + -0.2 615,223 - +0.6 615,262 - +0.4 615,329 - -0.4 615,380 + +0.1 615,421 + +0.4 615,492 + -0.1 615,492 + +0.1 615,493 - +0.4 615,576 + +1.1 615,576 + +0.5 615,576 + -0.4 615,577 - -0.8 615,577 - -1.3 615,810 + RR42_RS23575 0.74 -1.3 615,811 - RR42_RS23575 0.75 -0.2 615,811 - RR42_RS23575 0.75 -1.4 615,879 + +1.3 615,880 - -1.8 615,880 - +0.6 615,880 - -0.2 615,880 - +0.1 615,880 - +0.4 616,255 + +0.4 616,255 + -0.3 616,256 - -0.9 616,410 - +1.1 616,410 - +0.0 616,422 - -0.0 616,482 - RR42_RS23580 0.11 +0.0 616,586 + RR42_RS23580 0.27 -0.9 616,636 + RR42_RS23580 0.35 +0.7 616,664 + RR42_RS23580 0.39 +1.5 616,664 + RR42_RS23580 0.39 +0.3 616,665 - RR42_RS23580 0.39 -0.6 616,674 - RR42_RS23580 0.41 -0.4 616,742 + RR42_RS23580 0.51 +0.2 616,742 + RR42_RS23580 0.51 -0.7 616,838 + RR42_RS23580 0.66 +1.4 616,838 + RR42_RS23580 0.66 -1.1 616,838 + RR42_RS23580 0.66 +0.9 616,839 - RR42_RS23580 0.66 +0.7 616,839 - RR42_RS23580 0.66 -0.1 616,841 + RR42_RS23580 0.66 +0.3 616,841 + RR42_RS23580 0.66 -0.4 616,841 + RR42_RS23580 0.66 -0.0 616,847 + RR42_RS23580 0.67 +0.3 616,847 + RR42_RS23580 0.67 -1.8 616,848 - RR42_RS23580 0.67 -0.1 616,848 - RR42_RS23580 0.67 -0.7 616,848 - RR42_RS23580 0.67 -0.3 616,848 - RR42_RS23580 0.67 -0.5 616,856 + RR42_RS23580 0.69 +0.2
Or see this region's nucleotide sequence