Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23405 and RR42_RS23410 are separated by 236 nucleotides RR42_RS23410 and RR42_RS23415 are separated by 225 nucleotides RR42_RS23415 and RR42_RS23420 are separated by 54 nucleotides
RR42_RS23405: RR42_RS23405 - hypothetical protein, at 578,619 to 579,512
_RS23405
RR42_RS23410: RR42_RS23410 - hypothetical protein, at 579,749 to 580,648
_RS23410
RR42_RS23415: RR42_RS23415 - 4-carboxymuconolactone decarboxylase, at 580,874 to 581,428
_RS23415
RR42_RS23420: RR42_RS23420 - 3-oxoacyl-ACP reductase, at 581,483 to 582,283
_RS23420
Position (kb) 579
580
581 Strain fitness (log2 ratio) -1
0
1
2
3 at 578.750 kb on - strand, within RR42_RS23405 at 578.837 kb on + strand, within RR42_RS23405 at 578.838 kb on - strand, within RR42_RS23405 at 578.876 kb on - strand, within RR42_RS23405 at 578.924 kb on + strand, within RR42_RS23405 at 579.201 kb on + strand, within RR42_RS23405 at 579.202 kb on - strand, within RR42_RS23405 at 579.327 kb on + strand, within RR42_RS23405 at 579.327 kb on + strand, within RR42_RS23405 at 579.328 kb on - strand, within RR42_RS23405 at 579.328 kb on - strand, within RR42_RS23405 at 579.700 kb on + strand at 579.700 kb on + strand at 579.751 kb on - strand at 579.756 kb on - strand at 579.870 kb on - strand, within RR42_RS23410 at 579.947 kb on + strand, within RR42_RS23410 at 579.981 kb on + strand, within RR42_RS23410 at 580.041 kb on + strand, within RR42_RS23410 at 580.041 kb on + strand, within RR42_RS23410 at 580.042 kb on - strand, within RR42_RS23410 at 580.202 kb on + strand, within RR42_RS23410 at 580.202 kb on + strand, within RR42_RS23410 at 580.203 kb on - strand, within RR42_RS23410 at 580.338 kb on + strand, within RR42_RS23410 at 580.338 kb on + strand, within RR42_RS23410 at 580.486 kb on + strand, within RR42_RS23410 at 580.697 kb on - strand at 580.727 kb on + strand at 580.728 kb on - strand at 580.728 kb on - strand at 580.762 kb on + strand at 580.965 kb on + strand, within RR42_RS23415 at 580.965 kb on + strand, within RR42_RS23415 at 580.965 kb on + strand, within RR42_RS23415 at 581.033 kb on + strand, within RR42_RS23415 at 581.034 kb on - strand, within RR42_RS23415 at 581.034 kb on - strand, within RR42_RS23415 at 581.243 kb on - strand, within RR42_RS23415 at 581.282 kb on + strand, within RR42_RS23415 at 581.282 kb on + strand, within RR42_RS23415 at 581.283 kb on - strand, within RR42_RS23415 at 581.322 kb on + strand, within RR42_RS23415 at 581.348 kb on + strand, within RR42_RS23415 at 581.476 kb on - strand at 581.476 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 578,750 - RR42_RS23405 0.15 -0.3 578,837 + RR42_RS23405 0.24 +0.3 578,838 - RR42_RS23405 0.24 +1.4 578,876 - RR42_RS23405 0.29 +0.4 578,924 + RR42_RS23405 0.34 +3.1 579,201 + RR42_RS23405 0.65 -0.0 579,202 - RR42_RS23405 0.65 +0.9 579,327 + RR42_RS23405 0.79 +0.3 579,327 + RR42_RS23405 0.79 -0.2 579,328 - RR42_RS23405 0.79 +0.2 579,328 - RR42_RS23405 0.79 +0.7 579,700 + +0.3 579,700 + +0.6 579,751 - +0.2 579,756 - +0.1 579,870 - RR42_RS23410 0.13 +1.2 579,947 + RR42_RS23410 0.22 +1.3 579,981 + RR42_RS23410 0.26 +0.6 580,041 + RR42_RS23410 0.32 -0.0 580,041 + RR42_RS23410 0.32 -1.7 580,042 - RR42_RS23410 0.33 +0.3 580,202 + RR42_RS23410 0.50 -0.6 580,202 + RR42_RS23410 0.50 +0.3 580,203 - RR42_RS23410 0.50 +1.2 580,338 + RR42_RS23410 0.65 -0.9 580,338 + RR42_RS23410 0.65 +3.4 580,486 + RR42_RS23410 0.82 +0.5 580,697 - +0.7 580,727 + +0.4 580,728 - +1.7 580,728 - +0.1 580,762 + +0.7 580,965 + RR42_RS23415 0.16 +0.1 580,965 + RR42_RS23415 0.16 +0.7 580,965 + RR42_RS23415 0.16 +0.7 581,033 + RR42_RS23415 0.29 +0.1 581,034 - RR42_RS23415 0.29 +0.6 581,034 - RR42_RS23415 0.29 -0.5 581,243 - RR42_RS23415 0.66 -0.0 581,282 + RR42_RS23415 0.74 +0.9 581,282 + RR42_RS23415 0.74 +2.3 581,283 - RR42_RS23415 0.74 -0.4 581,322 + RR42_RS23415 0.81 -0.3 581,348 + RR42_RS23415 0.85 -0.6 581,476 - +0.1 581,476 - +0.8
Or see this region's nucleotide sequence