Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23255 and RR42_RS23260 are separated by 540 nucleotides RR42_RS23260 and RR42_RS23265 are separated by 28 nucleotides
RR42_RS23255: RR42_RS23255 - LysR family transcriptional regulator, at 547,878 to 548,750
_RS23255
RR42_RS23260: RR42_RS23260 - glutathione S-transferase, at 549,291 to 549,986
_RS23260
RR42_RS23265: RR42_RS23265 - MFS transporter, at 550,015 to 551,232
_RS23265
Position (kb) 549
550 Strain fitness (log2 ratio) -1
0
1
2 at 548.439 kb on + strand, within RR42_RS23255 at 548.439 kb on + strand, within RR42_RS23255 at 548.439 kb on + strand, within RR42_RS23255 at 548.478 kb on + strand, within RR42_RS23255 at 548.479 kb on - strand, within RR42_RS23255 at 548.626 kb on + strand, within RR42_RS23255 at 548.958 kb on + strand at 549.006 kb on + strand at 549.006 kb on + strand at 549.006 kb on + strand at 549.006 kb on + strand at 549.007 kb on - strand at 549.007 kb on - strand at 549.007 kb on - strand at 549.069 kb on + strand at 549.070 kb on - strand at 549.173 kb on + strand at 549.173 kb on + strand at 549.174 kb on - strand at 549.264 kb on + strand at 549.264 kb on + strand at 549.362 kb on - strand, within RR42_RS23260 at 549.421 kb on + strand, within RR42_RS23260 at 549.422 kb on - strand, within RR42_RS23260 at 549.472 kb on + strand, within RR42_RS23260 at 549.566 kb on - strand, within RR42_RS23260 at 549.630 kb on + strand, within RR42_RS23260 at 549.630 kb on + strand, within RR42_RS23260 at 549.670 kb on + strand, within RR42_RS23260 at 549.671 kb on - strand, within RR42_RS23260 at 549.671 kb on - strand, within RR42_RS23260 at 549.671 kb on - strand, within RR42_RS23260 at 549.751 kb on + strand, within RR42_RS23260 at 549.766 kb on + strand, within RR42_RS23260 at 549.922 kb on + strand at 549.967 kb on + strand at 550.005 kb on + strand at 550.017 kb on - strand at 550.124 kb on + strand at 550.124 kb on + strand at 550.124 kb on + strand at 550.124 kb on + strand at 550.142 kb on + strand, within RR42_RS23265 at 550.343 kb on + strand, within RR42_RS23265 at 550.343 kb on + strand, within RR42_RS23265 at 550.344 kb on - strand, within RR42_RS23265 at 550.344 kb on - strand, within RR42_RS23265 at 550.344 kb on - strand, within RR42_RS23265 at 550.344 kb on - strand, within RR42_RS23265 at 550.373 kb on + strand, within RR42_RS23265 at 550.373 kb on + strand, within RR42_RS23265 at 550.373 kb on + strand, within RR42_RS23265 at 550.374 kb on - strand, within RR42_RS23265 at 550.374 kb on - strand, within RR42_RS23265 at 550.442 kb on - strand, within RR42_RS23265 at 550.511 kb on + strand, within RR42_RS23265 at 550.511 kb on + strand, within RR42_RS23265 at 550.719 kb on + strand, within RR42_RS23265 at 550.720 kb on - strand, within RR42_RS23265 at 550.720 kb on - strand, within RR42_RS23265 at 550.983 kb on - strand, within RR42_RS23265
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 548,439 + RR42_RS23255 0.64 +0.0 548,439 + RR42_RS23255 0.64 -0.5 548,439 + RR42_RS23255 0.64 -0.2 548,478 + RR42_RS23255 0.69 +0.7 548,479 - RR42_RS23255 0.69 +0.1 548,626 + RR42_RS23255 0.86 -0.5 548,958 + -0.4 549,006 + +0.2 549,006 + -1.0 549,006 + +1.8 549,006 + +0.6 549,007 - +0.9 549,007 - +0.2 549,007 - +0.3 549,069 + -0.4 549,070 - +0.2 549,173 + -0.8 549,173 + +0.5 549,174 - -0.9 549,264 + -0.2 549,264 + -1.4 549,362 - RR42_RS23260 0.10 +0.6 549,421 + RR42_RS23260 0.19 +0.5 549,422 - RR42_RS23260 0.19 -0.6 549,472 + RR42_RS23260 0.26 +1.0 549,566 - RR42_RS23260 0.40 -0.1 549,630 + RR42_RS23260 0.49 +0.1 549,630 + RR42_RS23260 0.49 +0.4 549,670 + RR42_RS23260 0.54 -0.5 549,671 - RR42_RS23260 0.55 -1.5 549,671 - RR42_RS23260 0.55 +0.2 549,671 - RR42_RS23260 0.55 +0.0 549,751 + RR42_RS23260 0.66 -1.5 549,766 + RR42_RS23260 0.68 -1.0 549,922 + +0.7 549,967 + +0.8 550,005 + +0.1 550,017 - +0.7 550,124 + +1.1 550,124 + +0.0 550,124 + +1.0 550,124 + +1.0 550,142 + RR42_RS23265 0.10 +0.8 550,343 + RR42_RS23265 0.27 -0.2 550,343 + RR42_RS23265 0.27 +0.4 550,344 - RR42_RS23265 0.27 +0.4 550,344 - RR42_RS23265 0.27 -0.3 550,344 - RR42_RS23265 0.27 +0.2 550,344 - RR42_RS23265 0.27 +1.1 550,373 + RR42_RS23265 0.29 -1.5 550,373 + RR42_RS23265 0.29 +0.1 550,373 + RR42_RS23265 0.29 -1.4 550,374 - RR42_RS23265 0.29 +1.0 550,374 - RR42_RS23265 0.29 -0.3 550,442 - RR42_RS23265 0.35 +0.0 550,511 + RR42_RS23265 0.41 -0.4 550,511 + RR42_RS23265 0.41 +0.3 550,719 + RR42_RS23265 0.58 +1.5 550,720 - RR42_RS23265 0.58 +0.1 550,720 - RR42_RS23265 0.58 -0.3 550,983 - RR42_RS23265 0.79 -0.1
Or see this region's nucleotide sequence