Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS22930

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS22925 and RR42_RS22930 overlap by 1 nucleotidesRR42_RS22930 and RR42_RS22935 are separated by 53 nucleotides RR42_RS22925: RR42_RS22925 - RND transporter, at 475,120 to 476,193 _RS22925 RR42_RS22930: RR42_RS22930 - cytochrome C peroxidase, at 476,193 to 479,342 _RS22930 RR42_RS22935: RR42_RS22935 - metal transporter, at 479,396 to 480,613 _RS22935 Position (kb) 476 477 478 479 480Strain fitness (log2 ratio) -2 -1 0 1at 475.199 kb on + strandat 475.200 kb on - strandat 475.302 kb on - strand, within RR42_RS22925at 475.302 kb on - strand, within RR42_RS22925at 475.318 kb on + strand, within RR42_RS22925at 475.336 kb on + strand, within RR42_RS22925at 475.337 kb on - strand, within RR42_RS22925at 475.337 kb on - strand, within RR42_RS22925at 476.014 kb on + strand, within RR42_RS22925at 476.284 kb on - strandat 476.454 kb on + strandat 476.503 kb on - strandat 476.503 kb on - strandat 476.503 kb on - strandat 476.707 kb on + strand, within RR42_RS22930at 476.708 kb on - strand, within RR42_RS22930at 476.745 kb on + strand, within RR42_RS22930at 476.789 kb on + strand, within RR42_RS22930at 477.168 kb on + strand, within RR42_RS22930at 477.169 kb on - strand, within RR42_RS22930at 477.256 kb on - strand, within RR42_RS22930at 477.342 kb on + strand, within RR42_RS22930at 477.343 kb on - strand, within RR42_RS22930at 477.343 kb on - strand, within RR42_RS22930at 477.723 kb on + strand, within RR42_RS22930at 477.837 kb on + strand, within RR42_RS22930at 477.837 kb on + strand, within RR42_RS22930at 477.837 kb on + strand, within RR42_RS22930at 477.866 kb on + strand, within RR42_RS22930at 477.866 kb on + strand, within RR42_RS22930at 478.155 kb on + strand, within RR42_RS22930at 478.156 kb on - strand, within RR42_RS22930at 478.156 kb on - strand, within RR42_RS22930at 478.156 kb on - strand, within RR42_RS22930at 478.500 kb on - strand, within RR42_RS22930at 478.886 kb on + strand, within RR42_RS22930at 478.886 kb on + strand, within RR42_RS22930at 478.887 kb on - strand, within RR42_RS22930at 478.938 kb on + strand, within RR42_RS22930at 479.024 kb on + strand, within RR42_RS22930at 479.025 kb on - strand, within RR42_RS22930at 479.866 kb on - strand, within RR42_RS22935at 480.080 kb on + strand, within RR42_RS22935at 480.080 kb on + strand, within RR42_RS22935at 480.081 kb on - strand, within RR42_RS22935

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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475,199 + -1.9
475,200 - +0.4
475,302 - RR42_RS22925 0.17 -0.0
475,302 - RR42_RS22925 0.17 -0.3
475,318 + RR42_RS22925 0.18 -0.5
475,336 + RR42_RS22925 0.20 -1.3
475,337 - RR42_RS22925 0.20 -0.5
475,337 - RR42_RS22925 0.20 -1.4
476,014 + RR42_RS22925 0.83 +0.1
476,284 - +0.4
476,454 + -1.7
476,503 - -0.2
476,503 - -0.7
476,503 - +1.3
476,707 + RR42_RS22930 0.16 -0.6
476,708 - RR42_RS22930 0.16 -0.7
476,745 + RR42_RS22930 0.18 +0.0
476,789 + RR42_RS22930 0.19 +0.8
477,168 + RR42_RS22930 0.31 +0.2
477,169 - RR42_RS22930 0.31 +0.8
477,256 - RR42_RS22930 0.34 +0.3
477,342 + RR42_RS22930 0.36 -0.2
477,343 - RR42_RS22930 0.37 +0.1
477,343 - RR42_RS22930 0.37 -1.0
477,723 + RR42_RS22930 0.49 -0.3
477,837 + RR42_RS22930 0.52 -0.7
477,837 + RR42_RS22930 0.52 -0.5
477,837 + RR42_RS22930 0.52 -0.7
477,866 + RR42_RS22930 0.53 -0.1
477,866 + RR42_RS22930 0.53 -2.1
478,155 + RR42_RS22930 0.62 +0.5
478,156 - RR42_RS22930 0.62 -0.9
478,156 - RR42_RS22930 0.62 -0.5
478,156 - RR42_RS22930 0.62 -0.4
478,500 - RR42_RS22930 0.73 -1.7
478,886 + RR42_RS22930 0.85 +0.1
478,886 + RR42_RS22930 0.85 -0.7
478,887 - RR42_RS22930 0.86 -0.4
478,938 + RR42_RS22930 0.87 -1.3
479,024 + RR42_RS22930 0.90 -2.5
479,025 - RR42_RS22930 0.90 -0.4
479,866 - RR42_RS22935 0.39 -1.6
480,080 + RR42_RS22935 0.56 +0.3
480,080 + RR42_RS22935 0.56 +0.1
480,081 - RR42_RS22935 0.56 -1.2

Or see this region's nucleotide sequence