Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS21460

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS21455 and RR42_RS21460 are separated by 36 nucleotidesRR42_RS21460 and RR42_RS21465 are separated by 914 nucleotides RR42_RS21455: RR42_RS21455 - transposase, at 143,611 to 144,705 _RS21455 RR42_RS21460: RR42_RS21460 - hypothetical protein, at 144,742 to 144,957 _RS21460 RR42_RS21465: RR42_RS21465 - hypothetical protein, at 145,872 to 146,066 _RS21465 Position (kb) 144 145Strain fitness (log2 ratio) -2 -1 0 1 2at 143.975 kb on - strand, within RR42_RS21455at 144.191 kb on - strand, within RR42_RS21455at 144.636 kb on + strandat 144.636 kb on + strandat 144.766 kb on + strand, within RR42_RS21460at 144.767 kb on - strand, within RR42_RS21460at 144.827 kb on + strand, within RR42_RS21460at 144.828 kb on - strand, within RR42_RS21460at 144.880 kb on + strand, within RR42_RS21460at 144.880 kb on + strand, within RR42_RS21460at 145.012 kb on - strandat 145.100 kb on + strandat 145.100 kb on + strandat 145.100 kb on + strandat 145.100 kb on + strandat 145.103 kb on - strandat 145.192 kb on + strandat 145.192 kb on + strandat 145.192 kb on + strandat 145.204 kb on + strandat 145.204 kb on + strandat 145.205 kb on - strandat 145.243 kb on - strandat 145.326 kb on - strandat 145.561 kb on + strandat 145.593 kb on + strandat 145.595 kb on + strandat 145.640 kb on - strandat 145.668 kb on + strandat 145.686 kb on + strandat 145.687 kb on - strandat 145.700 kb on + strandat 145.700 kb on + strandat 145.724 kb on + strandat 145.903 kb on + strand, within RR42_RS21465at 145.903 kb on + strand, within RR42_RS21465at 145.904 kb on - strand, within RR42_RS21465at 145.939 kb on + strand, within RR42_RS21465at 145.939 kb on - strand, within RR42_RS21465at 145.939 kb on - strand, within RR42_RS21465at 145.939 kb on - strand, within RR42_RS21465at 145.951 kb on - strand, within RR42_RS21465at 145.951 kb on - strand, within RR42_RS21465

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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143,975 - RR42_RS21455 0.33 +2.1
144,191 - RR42_RS21455 0.53 +0.9
144,636 + -1.3
144,636 + -0.1
144,766 + RR42_RS21460 0.11 +0.1
144,767 - RR42_RS21460 0.12 +0.9
144,827 + RR42_RS21460 0.39 +1.4
144,828 - RR42_RS21460 0.40 +0.9
144,880 + RR42_RS21460 0.64 +0.7
144,880 + RR42_RS21460 0.64 +0.7
145,012 - -0.3
145,100 + +1.1
145,100 + +0.9
145,100 + +0.1
145,100 + +0.4
145,103 - -0.0
145,192 + -2.7
145,192 + -0.0
145,192 + +0.6
145,204 + -0.1
145,204 + +0.8
145,205 - +0.7
145,243 - +0.2
145,326 - +0.5
145,561 + -1.1
145,593 + -0.8
145,595 + -0.1
145,640 - +0.8
145,668 + -0.6
145,686 + +0.6
145,687 - -0.1
145,700 + +0.4
145,700 + +0.9
145,724 + +2.2
145,903 + RR42_RS21465 0.16 -0.2
145,903 + RR42_RS21465 0.16 -1.0
145,904 - RR42_RS21465 0.16 +0.4
145,939 + RR42_RS21465 0.34 -0.3
145,939 - RR42_RS21465 0.34 -1.0
145,939 - RR42_RS21465 0.34 -1.0
145,939 - RR42_RS21465 0.34 +1.1
145,951 - RR42_RS21465 0.41 +1.4
145,951 - RR42_RS21465 0.41 -0.1

Or see this region's nucleotide sequence