Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS20940 and RR42_RS20945 overlap by 4 nucleotides RR42_RS20945 and RR42_RS20950 are separated by 11 nucleotides RR42_RS20950 and RR42_RS20955 are separated by 359 nucleotides
RR42_RS20940: RR42_RS20940 - tyrosine protein kinase, at 24,078 to 26,321
_RS20940
RR42_RS20945: RR42_RS20945 - protein-tyrosine phosphatase, at 26,318 to 26,782
_RS20945
RR42_RS20950: RR42_RS20950 - multidrug MFS transporter, at 26,794 to 27,888
_RS20950
RR42_RS20955: RR42_RS20955 - LuxR family transcriptional regulator, at 28,248 to 29,189
_RS20955
Position (kb)
26
27
28 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 25.856 kb on + strand, within RR42_RS20940 at 25.924 kb on + strand, within RR42_RS20940 at 25.924 kb on + strand, within RR42_RS20940 at 25.924 kb on + strand, within RR42_RS20940 at 25.925 kb on - strand, within RR42_RS20940 at 25.957 kb on + strand, within RR42_RS20940 at 25.958 kb on - strand, within RR42_RS20940 at 26.324 kb on + strand at 26.419 kb on + strand, within RR42_RS20945 at 26.419 kb on + strand, within RR42_RS20945 at 26.420 kb on - strand, within RR42_RS20945 at 26.420 kb on - strand, within RR42_RS20945 at 26.638 kb on + strand, within RR42_RS20945 at 26.892 kb on - strand at 26.967 kb on - strand, within RR42_RS20950 at 27.109 kb on + strand, within RR42_RS20950 at 27.109 kb on + strand, within RR42_RS20950 at 27.110 kb on - strand, within RR42_RS20950 at 27.383 kb on + strand, within RR42_RS20950 at 27.383 kb on + strand, within RR42_RS20950 at 27.384 kb on - strand, within RR42_RS20950 at 27.384 kb on - strand, within RR42_RS20950 at 27.551 kb on + strand, within RR42_RS20950 at 27.551 kb on + strand, within RR42_RS20950 at 27.552 kb on - strand, within RR42_RS20950 at 27.687 kb on - strand, within RR42_RS20950 at 28.031 kb on + strand at 28.032 kb on - strand at 28.208 kb on + strand at 28.208 kb on + strand at 28.209 kb on - strand at 28.209 kb on - strand at 28.209 kb on - strand at 28.297 kb on - strand at 28.423 kb on - strand, within RR42_RS20955 at 28.438 kb on + strand, within RR42_RS20955 at 28.438 kb on + strand, within RR42_RS20955 at 28.439 kb on - strand, within RR42_RS20955 at 28.478 kb on + strand, within RR42_RS20955 at 28.488 kb on - strand, within RR42_RS20955 at 28.541 kb on - strand, within RR42_RS20955 at 28.541 kb on - strand, within RR42_RS20955 at 28.541 kb on - strand, within RR42_RS20955 at 28.541 kb on - strand, within RR42_RS20955 at 28.756 kb on + strand, within RR42_RS20955 at 28.828 kb on + strand, within RR42_RS20955 at 28.829 kb on - strand, within RR42_RS20955 at 28.829 kb on - strand, within RR42_RS20955 at 28.829 kb on - strand, within RR42_RS20955
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 25,856 + RR42_RS20940 0.79 +0.1 25,924 + RR42_RS20940 0.82 -1.0 25,924 + RR42_RS20940 0.82 +0.7 25,924 + RR42_RS20940 0.82 -0.7 25,925 - RR42_RS20940 0.82 +0.1 25,957 + RR42_RS20940 0.84 +1.1 25,958 - RR42_RS20940 0.84 +0.4 26,324 + -0.3 26,419 + RR42_RS20945 0.22 +0.1 26,419 + RR42_RS20945 0.22 -0.3 26,420 - RR42_RS20945 0.22 -0.6 26,420 - RR42_RS20945 0.22 +1.0 26,638 + RR42_RS20945 0.69 +0.7 26,892 - -2.1 26,967 - RR42_RS20950 0.16 +0.0 27,109 + RR42_RS20950 0.29 -0.3 27,109 + RR42_RS20950 0.29 +0.8 27,110 - RR42_RS20950 0.29 +0.2 27,383 + RR42_RS20950 0.54 -0.1 27,383 + RR42_RS20950 0.54 +0.7 27,384 - RR42_RS20950 0.54 +1.0 27,384 - RR42_RS20950 0.54 +0.4 27,551 + RR42_RS20950 0.69 +0.4 27,551 + RR42_RS20950 0.69 +1.8 27,552 - RR42_RS20950 0.69 +0.8 27,687 - RR42_RS20950 0.82 +0.6 28,031 + +0.2 28,032 - -0.6 28,208 + +0.2 28,208 + +0.1 28,209 - -0.0 28,209 - -0.2 28,209 - +0.3 28,297 - -0.9 28,423 - RR42_RS20955 0.19 +0.1 28,438 + RR42_RS20955 0.20 -2.8 28,438 + RR42_RS20955 0.20 -0.1 28,439 - RR42_RS20955 0.20 -0.4 28,478 + RR42_RS20955 0.24 +0.2 28,488 - RR42_RS20955 0.25 -0.8 28,541 - RR42_RS20955 0.31 +0.3 28,541 - RR42_RS20955 0.31 -0.1 28,541 - RR42_RS20955 0.31 -0.1 28,541 - RR42_RS20955 0.31 +0.8 28,756 + RR42_RS20955 0.54 -0.8 28,828 + RR42_RS20955 0.62 -0.7 28,829 - RR42_RS20955 0.62 -0.7 28,829 - RR42_RS20955 0.62 +0.8 28,829 - RR42_RS20955 0.62 +1.0
Or see this region's nucleotide sequence