Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS20950

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS20940 and RR42_RS20945 overlap by 4 nucleotidesRR42_RS20945 and RR42_RS20950 are separated by 11 nucleotidesRR42_RS20950 and RR42_RS20955 are separated by 359 nucleotides RR42_RS20940: RR42_RS20940 - tyrosine protein kinase, at 24,078 to 26,321 _RS20940 RR42_RS20945: RR42_RS20945 - protein-tyrosine phosphatase, at 26,318 to 26,782 _RS20945 RR42_RS20950: RR42_RS20950 - multidrug MFS transporter, at 26,794 to 27,888 _RS20950 RR42_RS20955: RR42_RS20955 - LuxR family transcriptional regulator, at 28,248 to 29,189 _RS20955 Position (kb) 26 27 28Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 25.856 kb on + strand, within RR42_RS20940at 25.924 kb on + strand, within RR42_RS20940at 25.924 kb on + strand, within RR42_RS20940at 25.924 kb on + strand, within RR42_RS20940at 25.925 kb on - strand, within RR42_RS20940at 25.957 kb on + strand, within RR42_RS20940at 25.958 kb on - strand, within RR42_RS20940at 26.324 kb on + strandat 26.419 kb on + strand, within RR42_RS20945at 26.419 kb on + strand, within RR42_RS20945at 26.420 kb on - strand, within RR42_RS20945at 26.420 kb on - strand, within RR42_RS20945at 26.638 kb on + strand, within RR42_RS20945at 26.892 kb on - strandat 26.967 kb on - strand, within RR42_RS20950at 27.109 kb on + strand, within RR42_RS20950at 27.109 kb on + strand, within RR42_RS20950at 27.110 kb on - strand, within RR42_RS20950at 27.383 kb on + strand, within RR42_RS20950at 27.383 kb on + strand, within RR42_RS20950at 27.384 kb on - strand, within RR42_RS20950at 27.384 kb on - strand, within RR42_RS20950at 27.551 kb on + strand, within RR42_RS20950at 27.551 kb on + strand, within RR42_RS20950at 27.552 kb on - strand, within RR42_RS20950at 27.687 kb on - strand, within RR42_RS20950at 28.031 kb on + strandat 28.032 kb on - strandat 28.208 kb on + strandat 28.208 kb on + strandat 28.209 kb on - strandat 28.209 kb on - strandat 28.209 kb on - strandat 28.297 kb on - strandat 28.423 kb on - strand, within RR42_RS20955at 28.438 kb on + strand, within RR42_RS20955at 28.438 kb on + strand, within RR42_RS20955at 28.439 kb on - strand, within RR42_RS20955at 28.478 kb on + strand, within RR42_RS20955at 28.488 kb on - strand, within RR42_RS20955at 28.541 kb on - strand, within RR42_RS20955at 28.541 kb on - strand, within RR42_RS20955at 28.541 kb on - strand, within RR42_RS20955at 28.541 kb on - strand, within RR42_RS20955at 28.756 kb on + strand, within RR42_RS20955at 28.828 kb on + strand, within RR42_RS20955at 28.829 kb on - strand, within RR42_RS20955at 28.829 kb on - strand, within RR42_RS20955at 28.829 kb on - strand, within RR42_RS20955

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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25,856 + RR42_RS20940 0.79 +0.1
25,924 + RR42_RS20940 0.82 -1.0
25,924 + RR42_RS20940 0.82 +0.7
25,924 + RR42_RS20940 0.82 -0.7
25,925 - RR42_RS20940 0.82 +0.1
25,957 + RR42_RS20940 0.84 +1.1
25,958 - RR42_RS20940 0.84 +0.4
26,324 + -0.3
26,419 + RR42_RS20945 0.22 +0.1
26,419 + RR42_RS20945 0.22 -0.3
26,420 - RR42_RS20945 0.22 -0.6
26,420 - RR42_RS20945 0.22 +1.0
26,638 + RR42_RS20945 0.69 +0.7
26,892 - -2.1
26,967 - RR42_RS20950 0.16 +0.0
27,109 + RR42_RS20950 0.29 -0.3
27,109 + RR42_RS20950 0.29 +0.8
27,110 - RR42_RS20950 0.29 +0.2
27,383 + RR42_RS20950 0.54 -0.1
27,383 + RR42_RS20950 0.54 +0.7
27,384 - RR42_RS20950 0.54 +1.0
27,384 - RR42_RS20950 0.54 +0.4
27,551 + RR42_RS20950 0.69 +0.4
27,551 + RR42_RS20950 0.69 +1.8
27,552 - RR42_RS20950 0.69 +0.8
27,687 - RR42_RS20950 0.82 +0.6
28,031 + +0.2
28,032 - -0.6
28,208 + +0.2
28,208 + +0.1
28,209 - -0.0
28,209 - -0.2
28,209 - +0.3
28,297 - -0.9
28,423 - RR42_RS20955 0.19 +0.1
28,438 + RR42_RS20955 0.20 -2.8
28,438 + RR42_RS20955 0.20 -0.1
28,439 - RR42_RS20955 0.20 -0.4
28,478 + RR42_RS20955 0.24 +0.2
28,488 - RR42_RS20955 0.25 -0.8
28,541 - RR42_RS20955 0.31 +0.3
28,541 - RR42_RS20955 0.31 -0.1
28,541 - RR42_RS20955 0.31 -0.1
28,541 - RR42_RS20955 0.31 +0.8
28,756 + RR42_RS20955 0.54 -0.8
28,828 + RR42_RS20955 0.62 -0.7
28,829 - RR42_RS20955 0.62 -0.7
28,829 - RR42_RS20955 0.62 +0.8
28,829 - RR42_RS20955 0.62 +1.0

Or see this region's nucleotide sequence