Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS18975

Experiment: L-Serine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Serine (N)
4,105,264	+				+0.6
4,105,265	-				-2.3
4,105,384	+		RR42_RS18970	0.21	-1.6
4,105,384	+		RR42_RS18970	0.21	-0.1
4,105,384	+		RR42_RS18970	0.21	-0.1
4,105,385	-		RR42_RS18970	0.21	-1.4
4,105,390	+		RR42_RS18970	0.21	-0.6
4,105,390	+		RR42_RS18970	0.21	-0.1
4,105,390	+		RR42_RS18970	0.21	+0.2
4,105,391	+		RR42_RS18970	0.21	+0.0
4,105,391	-		RR42_RS18970	0.21	-1.2
4,105,391	-		RR42_RS18970	0.21	+1.0
4,105,528	+		RR42_RS18970	0.38	-1.9
4,105,528	+		RR42_RS18970	0.38	+0.6
4,105,529	-		RR42_RS18970	0.38	-0.1
4,105,529	-		RR42_RS18970	0.38	-0.3
4,105,529	-		RR42_RS18970	0.38	-0.1
4,105,529	-		RR42_RS18970	0.38	+0.7
4,105,529	-		RR42_RS18970	0.38	-0.7
4,105,529	-		RR42_RS18970	0.38	-0.3
4,105,529	-		RR42_RS18970	0.38	-1.5
4,105,691	+		RR42_RS18970	0.58	-0.1
4,105,691	+		RR42_RS18970	0.58	-0.5
4,105,691	+		RR42_RS18970	0.58	-0.2
4,105,692	-		RR42_RS18970	0.58	-0.9
4,105,789	+		RR42_RS18970	0.70	-0.3
4,105,789	+		RR42_RS18970	0.70	+0.2
4,105,790	-		RR42_RS18970	0.70	-0.1
4,105,799	+		RR42_RS18970	0.71	-0.8
4,105,821	-		RR42_RS18970	0.74	-0.2
4,105,949	+		RR42_RS18970	0.89	+0.2
4,105,949	+		RR42_RS18970	0.89	+0.0
4,105,950	-		RR42_RS18970	0.89	-0.8
4,105,950	-		RR42_RS18970	0.89	-0.0
4,105,950	-		RR42_RS18970	0.89	-0.1
4,105,950	-		RR42_RS18970	0.89	-0.4
4,105,950	-		RR42_RS18970	0.89	-0.4
4,105,983	-				-0.3
4,105,984	+				-0.6
4,105,984	+				-1.1
4,105,985	-				+0.0
4,105,985	-				-1.4
4,106,050	+				-0.7
4,106,050	+				-0.5
4,106,051	-				+0.2
4,106,065	+				-1.0
4,106,065	+				-0.4
4,106,065	+				-0.8
4,106,066	-				+0.6
4,106,067	+				+0.2
4,106,067	+				-0.6
4,106,068	-				+0.6
4,106,068	-				-0.6
4,106,074	+				-2.1
4,106,077	+				+0.8
4,106,077	+				-0.1
4,106,077	+				+0.3
4,106,078	-				+0.4
4,106,078	-				-0.6
4,106,078	-				-0.6
4,106,078	-				+0.6
4,106,081	+				+0.6
4,106,081	+				+0.0
4,106,081	+				-0.3
4,106,082	-				-0.2
4,106,082	-				-0.5
4,106,082	-				-0.1
4,106,122	+				+0.4
4,106,122	+				+0.2
4,106,122	+				+0.2
4,106,123	-				+0.8
4,106,123	-				+0.6
4,106,123	-				-1.0
4,106,200	+				+0.7
4,106,201	-				+0.6
4,106,428	-		RR42_RS18975	0.22	-0.4
4,106,655	+		RR42_RS18975	0.42	+0.6
4,106,655	+		RR42_RS18975	0.42	+1.4
4,106,656	-		RR42_RS18975	0.42	-0.4
4,106,656	-		RR42_RS18975	0.42	+1.5
4,106,656	-		RR42_RS18975	0.42	+0.1
4,106,664	+		RR42_RS18975	0.43	+0.7
4,106,664	+		RR42_RS18975	0.43	-0.6
4,106,665	-		RR42_RS18975	0.43	+1.4
4,106,665	-		RR42_RS18975	0.43	+0.1
4,106,665	-		RR42_RS18975	0.43	+0.7
4,106,665	-		RR42_RS18975	0.43	-0.8
4,106,665	-		RR42_RS18975	0.43	+0.2
4,106,700	+		RR42_RS18975	0.46	+0.4
4,106,700	+		RR42_RS18975	0.46	-0.6
4,106,701	-		RR42_RS18975	0.46	-0.6
4,106,701	-		RR42_RS18975	0.46	+0.5
4,106,706	+		RR42_RS18975	0.47	-1.2
4,106,706	+		RR42_RS18975	0.47	+1.4
4,106,706	+		RR42_RS18975	0.47	-0.4
4,106,707	-		RR42_RS18975	0.47	+0.4
4,106,707	-		RR42_RS18975	0.47	+0.1
4,106,707	-		RR42_RS18975	0.47	+0.5
4,106,831	+		RR42_RS18975	0.58	+1.4
4,106,831	+		RR42_RS18975	0.58	+1.3
4,106,831	+		RR42_RS18975	0.58	-0.7
4,106,831	+		RR42_RS18975	0.58	+0.1
4,106,831	+		RR42_RS18975	0.58	-0.6
4,106,831	+		RR42_RS18975	0.58	+0.2
4,106,831	+		RR42_RS18975	0.58	+0.2
4,106,832	-		RR42_RS18975	0.58	+0.8
4,106,832	-		RR42_RS18975	0.58	+1.2
4,106,832	-		RR42_RS18975	0.58	-1.0
4,106,832	-		RR42_RS18975	0.58	+1.6
4,106,838	+		RR42_RS18975	0.59	-0.1
4,106,839	-		RR42_RS18975	0.59	+0.1
4,106,839	-		RR42_RS18975	0.59	+0.5
4,106,839	-		RR42_RS18975	0.59	+0.5
4,106,839	-		RR42_RS18975	0.59	+0.2
4,106,891	+		RR42_RS18975	0.64	-0.1
4,106,891	+		RR42_RS18975	0.64	+0.1
4,106,892	-		RR42_RS18975	0.64	-0.2
4,106,892	-		RR42_RS18975	0.64	+1.1
4,106,892	-		RR42_RS18975	0.64	-1.3
4,106,892	-		RR42_RS18975	0.64	+0.7
4,106,892	-		RR42_RS18975	0.64	+0.9
4,106,895	+		RR42_RS18975	0.64	-0.5
4,106,896	+		RR42_RS18975	0.64	-1.0
4,106,896	+		RR42_RS18975	0.64	-0.3
4,106,896	+		RR42_RS18975	0.64	+0.7
4,106,897	-		RR42_RS18975	0.64	-0.2
4,106,897	-		RR42_RS18975	0.64	+0.5
4,107,253	+				+2.4
4,107,254	-				+0.7
4,107,254	-				-0.4
4,107,254	-				+0.2
4,107,254	-				-0.2
4,107,254	-				-0.1
4,107,348	+				+0.4
4,107,348	+				+0.1
4,107,377	+				+0.1
4,107,377	+				+0.2
4,107,377	+				+0.1
4,107,377	+				+0.2
4,107,377	+				+0.4
4,107,394	+				-0.9
4,107,395	-				-1.0
4,107,395	-				+0.4
4,107,450	+				+0.6
4,107,450	+				-0.2
4,107,450	+				+0.1
4,107,450	+				+0.3
4,107,450	+				+0.1
4,107,450	+				+0.6
4,107,450	+				+0.5
4,107,450	+				-0.7
4,107,451	-				+0.7
4,107,451	-				+0.4
4,107,451	-				+0.7
4,107,507	+				+0.3
4,107,507	+				-1.1
4,107,507	+				+0.4
4,107,507	+				+0.6
4,107,507	+				+0.6
4,107,508	-				+0.7
4,107,508	-				+1.3
4,107,508	-				+0.0
4,107,509	+				-0.0
4,107,530	+				-1.0
4,107,530	+				-0.2
4,107,530	+				-2.0
4,107,530	+				+1.1
4,107,531	-				+0.1
4,107,531	-				-0.0
4,107,531	-				-1.1
4,107,531	-				+0.6
4,107,531	-				-0.1
4,107,698	+		RR42_RS18980	0.33	+0.5
4,107,698	+		RR42_RS18980	0.33	-1.3
4,107,698	+		RR42_RS18980	0.33	+0.1
4,107,699	-		RR42_RS18980	0.33	+1.1
4,107,699	-		RR42_RS18980	0.33	-3.3
4,107,699	-		RR42_RS18980	0.33	-0.5
4,107,699	-		RR42_RS18980	0.33	-0.0
4,107,814	+		RR42_RS18980	0.55	+0.3
4,107,959	+		RR42_RS18980	0.82	+2.1
4,108,011	-				-0.8
4,108,011	-				-0.1
4,108,011	-				+0.8
4,108,011	-				-0.1
4,108,039	+				-0.2
4,108,068	-				+1.2
4,108,069	+				+0.8