Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS16575

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS16570 and RR42_RS16575 are separated by 77 nucleotidesRR42_RS16575 and RR42_RS16580 are separated by 120 nucleotides RR42_RS16570: RR42_RS16570 - 2-nitropropane dioxygenase, at 3,590,772 to 3,591,845 _RS16570 RR42_RS16575: RR42_RS16575 - acyl-CoA dehydrogenase, at 3,591,923 to 3,593,152 _RS16575 RR42_RS16580: RR42_RS16580 - hypothetical protein, at 3,593,273 to 3,594,247 _RS16580 Position (kb) 3591 3592 3593 3594Strain fitness (log2 ratio) -1 0 1 2at 3591.514 kb on + strand, within RR42_RS16570at 3591.515 kb on - strand, within RR42_RS16570at 3592.087 kb on - strand, within RR42_RS16575at 3592.412 kb on + strand, within RR42_RS16575at 3592.491 kb on + strand, within RR42_RS16575at 3592.491 kb on + strand, within RR42_RS16575at 3592.491 kb on + strand, within RR42_RS16575at 3592.492 kb on - strand, within RR42_RS16575at 3592.690 kb on - strand, within RR42_RS16575at 3593.257 kb on - strandat 3593.583 kb on + strand, within RR42_RS16580at 3593.637 kb on - strand, within RR42_RS16580at 3593.690 kb on + strand, within RR42_RS16580at 3593.778 kb on - strand, within RR42_RS16580at 3593.778 kb on - strand, within RR42_RS16580at 3594.039 kb on - strand, within RR42_RS16580at 3594.054 kb on - strand, within RR42_RS16580

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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3,591,514 + RR42_RS16570 0.69 -0.2
3,591,515 - RR42_RS16570 0.69 +0.9
3,592,087 - RR42_RS16575 0.13 +0.3
3,592,412 + RR42_RS16575 0.40 -0.8
3,592,491 + RR42_RS16575 0.46 +1.7
3,592,491 + RR42_RS16575 0.46 +0.3
3,592,491 + RR42_RS16575 0.46 +0.3
3,592,492 - RR42_RS16575 0.46 +2.2
3,592,690 - RR42_RS16575 0.62 +0.4
3,593,257 - +0.7
3,593,583 + RR42_RS16580 0.32 -0.8
3,593,637 - RR42_RS16580 0.37 +0.1
3,593,690 + RR42_RS16580 0.43 +0.5
3,593,778 - RR42_RS16580 0.52 -0.4
3,593,778 - RR42_RS16580 0.52 +1.0
3,594,039 - RR42_RS16580 0.79 +0.2
3,594,054 - RR42_RS16580 0.80 -1.6

Or see this region's nucleotide sequence