Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS15175

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS15170 and RR42_RS15175 are separated by 317 nucleotidesRR42_RS15175 and RR42_RS15180 are separated by 12 nucleotides RR42_RS15170: RR42_RS15170 - peptidase, at 3,284,390 to 3,286,120 _RS15170 RR42_RS15175: RR42_RS15175 - membrane protein, at 3,286,438 to 3,286,899 _RS15175 RR42_RS15180: RR42_RS15180 - hypothetical protein, at 3,286,912 to 3,288,414 _RS15180 Position (kb) 3286 3287Strain fitness (log2 ratio) -2 -1 0 1at 3285.501 kb on + strand, within RR42_RS15170at 3285.501 kb on + strand, within RR42_RS15170at 3285.546 kb on - strand, within RR42_RS15170at 3285.700 kb on + strand, within RR42_RS15170at 3285.700 kb on + strand, within RR42_RS15170at 3285.701 kb on - strand, within RR42_RS15170at 3285.956 kb on - strandat 3286.005 kb on - strandat 3286.219 kb on + strandat 3286.219 kb on + strandat 3286.267 kb on + strandat 3286.276 kb on - strandat 3286.313 kb on + strandat 3286.313 kb on + strandat 3286.334 kb on - strandat 3286.522 kb on + strand, within RR42_RS15175at 3286.898 kb on - strandat 3286.911 kb on + strandat 3286.912 kb on - strandat 3286.919 kb on + strandat 3286.919 kb on + strandat 3286.919 kb on + strandat 3286.920 kb on - strandat 3286.922 kb on + strandat 3286.922 kb on + strandat 3286.923 kb on - strandat 3286.976 kb on - strandat 3287.203 kb on + strand, within RR42_RS15180at 3287.746 kb on + strand, within RR42_RS15180

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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3,285,501 + RR42_RS15170 0.64 +0.8
3,285,501 + RR42_RS15170 0.64 +0.2
3,285,546 - RR42_RS15170 0.67 +0.4
3,285,700 + RR42_RS15170 0.76 -2.2
3,285,700 + RR42_RS15170 0.76 +0.6
3,285,701 - RR42_RS15170 0.76 -0.8
3,285,956 - -0.3
3,286,005 - +0.6
3,286,219 + -1.6
3,286,219 + -0.7
3,286,267 + -1.6
3,286,276 - +0.0
3,286,313 + +0.2
3,286,313 + +0.1
3,286,334 - -0.9
3,286,522 + RR42_RS15175 0.18 +0.5
3,286,898 - +0.3
3,286,911 + -1.9
3,286,912 - +0.1
3,286,919 + -0.1
3,286,919 + +0.1
3,286,919 + +0.5
3,286,920 - +0.1
3,286,922 + -1.7
3,286,922 + -0.3
3,286,923 - -0.1
3,286,976 - -0.3
3,287,203 + RR42_RS15180 0.19 +1.3
3,287,746 + RR42_RS15180 0.55 +0.1

Or see this region's nucleotide sequence