Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS13250 and RR42_RS13255 are separated by 221 nucleotides RR42_RS13255 and RR42_RS13260 overlap by 4 nucleotides
RR42_RS13250: RR42_RS13250 - LacI family transcriptional regulator, at 2,853,548 to 2,854,498
_RS13250
RR42_RS13255: RR42_RS13255 - hydroxymethylglutaryl-CoA lyase, at 2,854,720 to 2,855,688
_RS13255
RR42_RS13260: RR42_RS13260 - CoA-transferase, at 2,855,685 to 2,856,881
_RS13260
Position (kb)
2854
2855
2856 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2853.757 kb on - strand, within RR42_RS13250 at 2853.757 kb on - strand, within RR42_RS13250 at 2853.757 kb on - strand, within RR42_RS13250 at 2853.968 kb on + strand, within RR42_RS13250 at 2853.970 kb on - strand, within RR42_RS13250 at 2853.970 kb on - strand, within RR42_RS13250 at 2853.970 kb on - strand, within RR42_RS13250 at 2853.970 kb on - strand, within RR42_RS13250 at 2854.056 kb on + strand, within RR42_RS13250 at 2854.087 kb on - strand, within RR42_RS13250 at 2854.087 kb on - strand, within RR42_RS13250 at 2854.258 kb on - strand, within RR42_RS13250 at 2854.328 kb on + strand, within RR42_RS13250 at 2854.328 kb on + strand, within RR42_RS13250 at 2854.328 kb on + strand, within RR42_RS13250 at 2854.328 kb on + strand, within RR42_RS13250 at 2854.899 kb on + strand, within RR42_RS13255 at 2854.900 kb on - strand, within RR42_RS13255 at 2854.900 kb on - strand, within RR42_RS13255 at 2854.900 kb on - strand, within RR42_RS13255 at 2854.900 kb on - strand, within RR42_RS13255 at 2854.900 kb on - strand, within RR42_RS13255 at 2854.900 kb on - strand, within RR42_RS13255 at 2855.120 kb on + strand, within RR42_RS13255 at 2855.121 kb on - strand, within RR42_RS13255 at 2855.346 kb on + strand, within RR42_RS13255 at 2855.347 kb on - strand, within RR42_RS13255 at 2855.442 kb on - strand, within RR42_RS13255 at 2855.893 kb on + strand, within RR42_RS13260 at 2855.926 kb on + strand, within RR42_RS13260 at 2855.927 kb on - strand, within RR42_RS13260 at 2856.146 kb on - strand, within RR42_RS13260 at 2856.146 kb on - strand, within RR42_RS13260 at 2856.236 kb on - strand, within RR42_RS13260 at 2856.278 kb on - strand, within RR42_RS13260 at 2856.431 kb on - strand, within RR42_RS13260 at 2856.556 kb on + strand, within RR42_RS13260 at 2856.557 kb on - strand, within RR42_RS13260
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 2,853,757 - RR42_RS13250 0.22 +0.3 2,853,757 - RR42_RS13250 0.22 -0.1 2,853,757 - RR42_RS13250 0.22 -0.1 2,853,968 + RR42_RS13250 0.44 +0.7 2,853,970 - RR42_RS13250 0.44 +0.9 2,853,970 - RR42_RS13250 0.44 -0.1 2,853,970 - RR42_RS13250 0.44 +0.0 2,853,970 - RR42_RS13250 0.44 -0.3 2,854,056 + RR42_RS13250 0.53 -0.2 2,854,087 - RR42_RS13250 0.57 +0.9 2,854,087 - RR42_RS13250 0.57 -0.8 2,854,258 - RR42_RS13250 0.75 +0.6 2,854,328 + RR42_RS13250 0.82 -2.1 2,854,328 + RR42_RS13250 0.82 -0.1 2,854,328 + RR42_RS13250 0.82 -0.7 2,854,328 + RR42_RS13250 0.82 -0.3 2,854,899 + RR42_RS13255 0.18 +0.2 2,854,900 - RR42_RS13255 0.19 +0.6 2,854,900 - RR42_RS13255 0.19 -1.4 2,854,900 - RR42_RS13255 0.19 -1.1 2,854,900 - RR42_RS13255 0.19 -0.7 2,854,900 - RR42_RS13255 0.19 -1.0 2,854,900 - RR42_RS13255 0.19 -0.1 2,855,120 + RR42_RS13255 0.41 -0.9 2,855,121 - RR42_RS13255 0.41 +0.2 2,855,346 + RR42_RS13255 0.65 -0.9 2,855,347 - RR42_RS13255 0.65 +1.3 2,855,442 - RR42_RS13255 0.75 -1.1 2,855,893 + RR42_RS13260 0.17 -0.3 2,855,926 + RR42_RS13260 0.20 +0.9 2,855,927 - RR42_RS13260 0.20 +1.3 2,856,146 - RR42_RS13260 0.39 -2.1 2,856,146 - RR42_RS13260 0.39 -0.2 2,856,236 - RR42_RS13260 0.46 +1.9 2,856,278 - RR42_RS13260 0.50 +0.2 2,856,431 - RR42_RS13260 0.62 +0.6 2,856,556 + RR42_RS13260 0.73 +2.0 2,856,557 - RR42_RS13260 0.73 +0.3
Or see this region's nucleotide sequence