Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS09030

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS09025 and RR42_RS09030 are separated by 249 nucleotidesRR42_RS09030 and RR42_RS09035 are separated by 296 nucleotidesRR42_RS09035 and RR42_RS09040 are separated by 55 nucleotidesRR42_RS09040 and RR42_RS09045 are separated by 248 nucleotides RR42_RS09025: RR42_RS09025 - Clp protease ATP-binding protein, at 1,896,512 to 1,897,786 _RS09025 RR42_RS09030: RR42_RS09030 - DNA-binding protein, at 1,898,036 to 1,900,447 _RS09030 RR42_RS09035: RR42_RS09035 - tRNA-Val, at 1,900,744 to 1,900,819 _RS09035 RR42_RS09040: RR42_RS09040 - tRNA-Asp, at 1,900,875 to 1,900,951 _RS09040 RR42_RS09045: RR42_RS09045 - peptidylprolyl isomerase, at 1,901,200 to 1,903,149 _RS09045 Position (kb) 1898 1899 1900 1901Strain fitness (log2 ratio) -2 -1 0 1at 1897.751 kb on + strandat 1897.751 kb on + strandat 1897.752 kb on - strandat 1897.803 kb on + strandat 1897.904 kb on + strandat 1898.007 kb on + strandat 1898.013 kb on + strandat 1898.726 kb on + strand, within RR42_RS09030at 1899.233 kb on + strand, within RR42_RS09030at 1899.554 kb on + strand, within RR42_RS09030at 1900.360 kb on + strandat 1900.470 kb on + strandat 1900.470 kb on + strandat 1900.471 kb on - strandat 1900.607 kb on + strandat 1900.607 kb on + strandat 1900.607 kb on + strandat 1900.626 kb on + strandat 1900.627 kb on - strandat 1900.653 kb on + strandat 1900.696 kb on + strandat 1900.896 kb on - strand, within RR42_RS09040at 1901.092 kb on - strandat 1901.093 kb on + strandat 1901.093 kb on + strandat 1901.094 kb on - strandat 1901.094 kb on - strandat 1901.094 kb on - strandat 1901.152 kb on - strandat 1901.152 kb on - strandat 1901.152 kb on - strandat 1901.293 kb on + strandat 1901.293 kb on + strandat 1901.346 kb on + strandat 1901.419 kb on + strand, within RR42_RS09045

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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1,897,751 + -0.6
1,897,751 + -0.3
1,897,752 - -2.2
1,897,803 + -0.7
1,897,904 + -0.4
1,898,007 + +0.6
1,898,013 + -0.4
1,898,726 + RR42_RS09030 0.29 +0.6
1,899,233 + RR42_RS09030 0.50 -2.4
1,899,554 + RR42_RS09030 0.63 -1.5
1,900,360 + -1.6
1,900,470 + -1.3
1,900,470 + -1.2
1,900,471 - -1.3
1,900,607 + +0.8
1,900,607 + +0.0
1,900,607 + -2.4
1,900,626 + +0.0
1,900,627 - -1.4
1,900,653 + +0.0
1,900,696 + -2.0
1,900,896 - RR42_RS09040 0.27 -0.7
1,901,092 - -0.5
1,901,093 + -0.6
1,901,093 + +0.3
1,901,094 - -0.4
1,901,094 - -0.8
1,901,094 - -0.4
1,901,152 - -0.4
1,901,152 - -0.2
1,901,152 - -0.7
1,901,293 + -0.0
1,901,293 + +0.2
1,901,346 + -1.0
1,901,419 + RR42_RS09045 0.11 -1.0

Or see this region's nucleotide sequence