Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS09025 and RR42_RS09030 are separated by 249 nucleotides RR42_RS09030 and RR42_RS09035 are separated by 296 nucleotides RR42_RS09035 and RR42_RS09040 are separated by 55 nucleotides RR42_RS09040 and RR42_RS09045 are separated by 248 nucleotides
RR42_RS09025: RR42_RS09025 - Clp protease ATP-binding protein, at 1,896,512 to 1,897,786
_RS09025
RR42_RS09030: RR42_RS09030 - DNA-binding protein, at 1,898,036 to 1,900,447
_RS09030
RR42_RS09035: RR42_RS09035 - tRNA-Val, at 1,900,744 to 1,900,819
_RS09035
RR42_RS09040: RR42_RS09040 - tRNA-Asp, at 1,900,875 to 1,900,951
_RS09040
RR42_RS09045: RR42_RS09045 - peptidylprolyl isomerase, at 1,901,200 to 1,903,149
_RS09045
Position (kb)
1898
1899
1900
1901 Strain fitness (log2 ratio)
-2
-1
0
1 at 1897.751 kb on + strand at 1897.751 kb on + strand at 1897.752 kb on - strand at 1897.803 kb on + strand at 1897.904 kb on + strand at 1898.007 kb on + strand at 1898.013 kb on + strand at 1898.726 kb on + strand, within RR42_RS09030 at 1899.233 kb on + strand, within RR42_RS09030 at 1899.554 kb on + strand, within RR42_RS09030 at 1900.360 kb on + strand at 1900.470 kb on + strand at 1900.470 kb on + strand at 1900.471 kb on - strand at 1900.607 kb on + strand at 1900.607 kb on + strand at 1900.607 kb on + strand at 1900.626 kb on + strand at 1900.627 kb on - strand at 1900.653 kb on + strand at 1900.696 kb on + strand at 1900.896 kb on - strand, within RR42_RS09040 at 1901.092 kb on - strand at 1901.093 kb on + strand at 1901.093 kb on + strand at 1901.094 kb on - strand at 1901.094 kb on - strand at 1901.094 kb on - strand at 1901.152 kb on - strand at 1901.152 kb on - strand at 1901.152 kb on - strand at 1901.293 kb on + strand at 1901.293 kb on + strand at 1901.346 kb on + strand at 1901.419 kb on + strand, within RR42_RS09045
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 1,897,751 + -0.6 1,897,751 + -0.3 1,897,752 - -2.2 1,897,803 + -0.7 1,897,904 + -0.4 1,898,007 + +0.6 1,898,013 + -0.4 1,898,726 + RR42_RS09030 0.29 +0.6 1,899,233 + RR42_RS09030 0.50 -2.4 1,899,554 + RR42_RS09030 0.63 -1.5 1,900,360 + -1.6 1,900,470 + -1.3 1,900,470 + -1.2 1,900,471 - -1.3 1,900,607 + +0.8 1,900,607 + +0.0 1,900,607 + -2.4 1,900,626 + +0.0 1,900,627 - -1.4 1,900,653 + +0.0 1,900,696 + -2.0 1,900,896 - RR42_RS09040 0.27 -0.7 1,901,092 - -0.5 1,901,093 + -0.6 1,901,093 + +0.3 1,901,094 - -0.4 1,901,094 - -0.8 1,901,094 - -0.4 1,901,152 - -0.4 1,901,152 - -0.2 1,901,152 - -0.7 1,901,293 + -0.0 1,901,293 + +0.2 1,901,346 + -1.0 1,901,419 + RR42_RS09045 0.11 -1.0
Or see this region's nucleotide sequence