Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS07120 and RR42_RS07125 are separated by 56 nucleotides RR42_RS07125 and RR42_RS07130 overlap by 8 nucleotides RR42_RS07130 and RR42_RS07135 are separated by 116 nucleotides
RR42_RS07120: RR42_RS07120 - hypothetical protein, at 1,526,499 to 1,527,764
_RS07120
RR42_RS07125: RR42_RS07125 - hypothetical protein, at 1,527,821 to 1,528,297
_RS07125
RR42_RS07130: RR42_RS07130 - hypothetical protein, at 1,528,290 to 1,528,499
_RS07130
RR42_RS07135: RR42_RS07135 - hypothetical protein, at 1,528,616 to 1,530,304
_RS07135
Position (kb)
1527
1528
1529 Strain fitness (log2 ratio)
-2
-1
0
1 at 1526.886 kb on - strand, within RR42_RS07120 at 1526.979 kb on - strand, within RR42_RS07120 at 1527.024 kb on + strand, within RR42_RS07120 at 1527.149 kb on + strand, within RR42_RS07120 at 1527.149 kb on + strand, within RR42_RS07120 at 1527.150 kb on - strand, within RR42_RS07120 at 1527.370 kb on + strand, within RR42_RS07120 at 1527.407 kb on + strand, within RR42_RS07120 at 1527.605 kb on - strand, within RR42_RS07120 at 1527.605 kb on - strand, within RR42_RS07120 at 1527.666 kb on + strand at 1527.666 kb on + strand at 1527.680 kb on - strand at 1527.714 kb on + strand at 1527.714 kb on + strand at 1527.715 kb on - strand at 1527.715 kb on - strand at 1527.715 kb on - strand at 1527.776 kb on + strand at 1527.777 kb on - strand at 1527.777 kb on - strand at 1527.777 kb on - strand at 1527.863 kb on - strand at 1527.893 kb on + strand, within RR42_RS07125 at 1528.037 kb on - strand, within RR42_RS07125 at 1528.396 kb on - strand, within RR42_RS07130 at 1528.396 kb on - strand, within RR42_RS07130 at 1528.637 kb on + strand at 1528.637 kb on + strand at 1528.981 kb on + strand, within RR42_RS07135 at 1529.069 kb on + strand, within RR42_RS07135 at 1529.110 kb on + strand, within RR42_RS07135 at 1529.138 kb on + strand, within RR42_RS07135 at 1529.255 kb on + strand, within RR42_RS07135
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 1,526,886 - RR42_RS07120 0.31 +0.2 1,526,979 - RR42_RS07120 0.38 -0.7 1,527,024 + RR42_RS07120 0.41 -0.6 1,527,149 + RR42_RS07120 0.51 -0.3 1,527,149 + RR42_RS07120 0.51 -0.4 1,527,150 - RR42_RS07120 0.51 +0.3 1,527,370 + RR42_RS07120 0.69 -1.1 1,527,407 + RR42_RS07120 0.72 +0.2 1,527,605 - RR42_RS07120 0.87 -1.4 1,527,605 - RR42_RS07120 0.87 -0.4 1,527,666 + -0.3 1,527,666 + +0.3 1,527,680 - -1.0 1,527,714 + -1.9 1,527,714 + -0.8 1,527,715 - +0.4 1,527,715 - -0.2 1,527,715 - -0.2 1,527,776 + +0.4 1,527,777 - +0.4 1,527,777 - -0.2 1,527,777 - -0.2 1,527,863 - +1.1 1,527,893 + RR42_RS07125 0.15 -1.6 1,528,037 - RR42_RS07125 0.45 +1.6 1,528,396 - RR42_RS07130 0.50 +0.9 1,528,396 - RR42_RS07130 0.50 -0.4 1,528,637 + -2.5 1,528,637 + +0.7 1,528,981 + RR42_RS07135 0.22 +0.1 1,529,069 + RR42_RS07135 0.27 +0.1 1,529,110 + RR42_RS07135 0.29 -0.8 1,529,138 + RR42_RS07135 0.31 -0.4 1,529,255 + RR42_RS07135 0.38 -0.4
Or see this region's nucleotide sequence