Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS04415

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS04410 and RR42_RS04415 are separated by 240 nucleotidesRR42_RS04415 and RR42_RS04420 are separated by 2 nucleotidesRR42_RS04420 and RR42_RS04425 are separated by 8 nucleotides RR42_RS04410: RR42_RS04410 - cyanophycin synthetase, at 982,355 to 984,991 _RS04410 RR42_RS04415: RR42_RS04415 - ABC transporter, at 985,232 to 987,520 _RS04415 RR42_RS04420: RR42_RS04420 - required for efflux of an amino acid polymer (from data), at 987,523 to 988,005 _RS04420 RR42_RS04425: RR42_RS04425 - hypothetical protein, at 988,014 to 988,877 _RS04425 Position (kb) 985 986 987 988Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 984.411 kb on + strand, within RR42_RS04410at 984.411 kb on + strand, within RR42_RS04410at 984.411 kb on + strand, within RR42_RS04410at 984.559 kb on - strand, within RR42_RS04410at 984.654 kb on + strand, within RR42_RS04410at 984.654 kb on + strand, within RR42_RS04410at 984.853 kb on - strandat 984.927 kb on + strandat 984.928 kb on - strandat 984.997 kb on + strandat 984.998 kb on - strandat 985.030 kb on - strandat 985.030 kb on - strandat 985.030 kb on - strandat 985.038 kb on - strandat 985.048 kb on + strandat 985.049 kb on - strandat 985.049 kb on - strandat 985.054 kb on + strandat 985.131 kb on + strandat 985.131 kb on + strandat 985.132 kb on - strandat 985.132 kb on - strandat 985.136 kb on - strandat 985.136 kb on - strandat 985.194 kb on - strandat 985.194 kb on - strandat 985.201 kb on + strandat 985.202 kb on - strandat 985.232 kb on - strandat 985.383 kb on + strandat 985.543 kb on + strand, within RR42_RS04415at 985.544 kb on - strand, within RR42_RS04415at 985.554 kb on - strand, within RR42_RS04415at 985.908 kb on - strand, within RR42_RS04415at 985.985 kb on + strand, within RR42_RS04415at 985.986 kb on - strand, within RR42_RS04415at 985.986 kb on - strand, within RR42_RS04415at 985.986 kb on - strand, within RR42_RS04415at 986.039 kb on + strand, within RR42_RS04415at 986.039 kb on + strand, within RR42_RS04415at 986.039 kb on + strand, within RR42_RS04415at 986.040 kb on - strand, within RR42_RS04415at 986.040 kb on - strand, within RR42_RS04415at 986.040 kb on - strand, within RR42_RS04415at 986.064 kb on + strand, within RR42_RS04415at 986.141 kb on - strand, within RR42_RS04415at 986.594 kb on + strand, within RR42_RS04415at 986.594 kb on + strand, within RR42_RS04415at 986.594 kb on + strand, within RR42_RS04415at 986.594 kb on + strand, within RR42_RS04415at 986.594 kb on + strand, within RR42_RS04415at 986.594 kb on + strand, within RR42_RS04415at 986.595 kb on - strand, within RR42_RS04415at 986.596 kb on + strand, within RR42_RS04415at 986.686 kb on + strand, within RR42_RS04415at 986.904 kb on - strand, within RR42_RS04415at 986.904 kb on - strand, within RR42_RS04415at 986.904 kb on - strand, within RR42_RS04415at 986.904 kb on - strand, within RR42_RS04415at 986.904 kb on - strand, within RR42_RS04415at 986.904 kb on - strand, within RR42_RS04415at 986.904 kb on - strand, within RR42_RS04415at 987.437 kb on + strandat 987.440 kb on + strandat 987.440 kb on + strandat 987.450 kb on - strandat 987.518 kb on + strandat 987.519 kb on - strandat 987.718 kb on - strand, within RR42_RS04420at 987.811 kb on + strand, within RR42_RS04420at 987.812 kb on - strand, within RR42_RS04420at 987.906 kb on + strand, within RR42_RS04420at 987.906 kb on + strand, within RR42_RS04420at 987.906 kb on + strand, within RR42_RS04420at 987.907 kb on - strand, within RR42_RS04420at 987.907 kb on - strand, within RR42_RS04420at 987.940 kb on + strand, within RR42_RS04420at 988.072 kb on + strandat 988.072 kb on + strandat 988.072 kb on + strandat 988.072 kb on + strandat 988.097 kb on + strandat 988.097 kb on + strandat 988.097 kb on + strandat 988.097 kb on + strandat 988.097 kb on + strandat 988.097 kb on + strandat 988.098 kb on - strandat 988.098 kb on - strandat 988.098 kb on - strandat 988.098 kb on - strandat 988.117 kb on + strand, within RR42_RS04425at 988.117 kb on + strand, within RR42_RS04425at 988.117 kb on + strand, within RR42_RS04425at 988.118 kb on - strand, within RR42_RS04425at 988.118 kb on - strand, within RR42_RS04425at 988.118 kb on - strand, within RR42_RS04425at 988.118 kb on - strand, within RR42_RS04425at 988.118 kb on - strand, within RR42_RS04425at 988.118 kb on - strand, within RR42_RS04425at 988.120 kb on + strand, within RR42_RS04425at 988.190 kb on - strand, within RR42_RS04425at 988.254 kb on + strand, within RR42_RS04425at 988.254 kb on + strand, within RR42_RS04425at 988.291 kb on - strand, within RR42_RS04425at 988.339 kb on + strand, within RR42_RS04425at 988.339 kb on + strand, within RR42_RS04425at 988.339 kb on + strand, within RR42_RS04425at 988.342 kb on + strand, within RR42_RS04425at 988.342 kb on + strand, within RR42_RS04425at 988.342 kb on + strand, within RR42_RS04425at 988.342 kb on + strand, within RR42_RS04425at 988.342 kb on + strand, within RR42_RS04425at 988.343 kb on - strand, within RR42_RS04425at 988.343 kb on - strand, within RR42_RS04425at 988.343 kb on - strand, within RR42_RS04425at 988.343 kb on - strand, within RR42_RS04425at 988.343 kb on - strand, within RR42_RS04425at 988.381 kb on + strand, within RR42_RS04425at 988.382 kb on - strand, within RR42_RS04425at 988.393 kb on + strand, within RR42_RS04425at 988.393 kb on + strand, within RR42_RS04425at 988.393 kb on + strand, within RR42_RS04425at 988.393 kb on + strand, within RR42_RS04425at 988.393 kb on + strand, within RR42_RS04425at 988.394 kb on - strand, within RR42_RS04425at 988.394 kb on - strand, within RR42_RS04425at 988.394 kb on - strand, within RR42_RS04425at 988.430 kb on - strand, within RR42_RS04425at 988.465 kb on + strand, within RR42_RS04425at 988.465 kb on + strand, within RR42_RS04425

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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984,411 + RR42_RS04410 0.78 +0.2
984,411 + RR42_RS04410 0.78 +0.4
984,411 + RR42_RS04410 0.78 +0.2
984,559 - RR42_RS04410 0.84 +0.3
984,654 + RR42_RS04410 0.87 +0.3
984,654 + RR42_RS04410 0.87 +1.0
984,853 - +0.8
984,927 + +0.8
984,928 - -0.9
984,997 + -0.4
984,998 - +0.1
985,030 - -0.3
985,030 - -0.3
985,030 - +0.7
985,038 - -1.5
985,048 + -1.1
985,049 - +1.3
985,049 - +0.6
985,054 + +0.2
985,131 + -0.1
985,131 + +0.0
985,132 - +0.9
985,132 - +0.4
985,136 - +0.8
985,136 - -1.0
985,194 - -0.0
985,194 - +0.6
985,201 + +0.5
985,202 - -0.4
985,232 - -0.1
985,383 + +0.7
985,543 + RR42_RS04415 0.14 +0.0
985,544 - RR42_RS04415 0.14 +0.5
985,554 - RR42_RS04415 0.14 +0.2
985,908 - RR42_RS04415 0.30 +0.5
985,985 + RR42_RS04415 0.33 +1.9
985,986 - RR42_RS04415 0.33 +1.2
985,986 - RR42_RS04415 0.33 +0.4
985,986 - RR42_RS04415 0.33 +0.4
986,039 + RR42_RS04415 0.35 +1.2
986,039 + RR42_RS04415 0.35 +0.3
986,039 + RR42_RS04415 0.35 -1.0
986,040 - RR42_RS04415 0.35 +0.2
986,040 - RR42_RS04415 0.35 +0.5
986,040 - RR42_RS04415 0.35 +0.5
986,064 + RR42_RS04415 0.36 +0.1
986,141 - RR42_RS04415 0.40 +1.9
986,594 + RR42_RS04415 0.60 +0.5
986,594 + RR42_RS04415 0.60 -0.4
986,594 + RR42_RS04415 0.60 +0.4
986,594 + RR42_RS04415 0.60 -0.6
986,594 + RR42_RS04415 0.60 +0.3
986,594 + RR42_RS04415 0.60 +1.6
986,595 - RR42_RS04415 0.60 +0.5
986,596 + RR42_RS04415 0.60 +1.4
986,686 + RR42_RS04415 0.64 +0.8
986,904 - RR42_RS04415 0.73 +0.8
986,904 - RR42_RS04415 0.73 -0.0
986,904 - RR42_RS04415 0.73 +0.1
986,904 - RR42_RS04415 0.73 +0.9
986,904 - RR42_RS04415 0.73 -0.1
986,904 - RR42_RS04415 0.73 +0.8
986,904 - RR42_RS04415 0.73 +0.5
987,437 + +0.4
987,440 + -0.9
987,440 + -0.6
987,450 - +0.8
987,518 + +0.2
987,519 - +0.5
987,718 - RR42_RS04420 0.40 -0.5
987,811 + RR42_RS04420 0.60 +0.1
987,812 - RR42_RS04420 0.60 +1.2
987,906 + RR42_RS04420 0.79 +0.2
987,906 + RR42_RS04420 0.79 +0.6
987,906 + RR42_RS04420 0.79 +1.6
987,907 - RR42_RS04420 0.80 +0.3
987,907 - RR42_RS04420 0.80 +1.1
987,940 + RR42_RS04420 0.86 +0.2
988,072 + +0.1
988,072 + -0.4
988,072 + +0.1
988,072 + -0.2
988,097 + +0.2
988,097 + -1.4
988,097 + -0.4
988,097 + -0.8
988,097 + +0.5
988,097 + +0.1
988,098 - +1.6
988,098 - +0.4
988,098 - -3.0
988,098 - -0.9
988,117 + RR42_RS04425 0.12 -0.6
988,117 + RR42_RS04425 0.12 +0.0
988,117 + RR42_RS04425 0.12 +0.2
988,118 - RR42_RS04425 0.12 -0.2
988,118 - RR42_RS04425 0.12 +0.8
988,118 - RR42_RS04425 0.12 -1.3
988,118 - RR42_RS04425 0.12 -0.4
988,118 - RR42_RS04425 0.12 +0.4
988,118 - RR42_RS04425 0.12 -0.9
988,120 + RR42_RS04425 0.12 -0.2
988,190 - RR42_RS04425 0.20 -0.3
988,254 + RR42_RS04425 0.28 -0.9
988,254 + RR42_RS04425 0.28 +0.3
988,291 - RR42_RS04425 0.32 -0.9
988,339 + RR42_RS04425 0.38 +0.9
988,339 + RR42_RS04425 0.38 -0.7
988,339 + RR42_RS04425 0.38 -0.2
988,342 + RR42_RS04425 0.38 +0.7
988,342 + RR42_RS04425 0.38 +0.4
988,342 + RR42_RS04425 0.38 +1.1
988,342 + RR42_RS04425 0.38 -0.0
988,342 + RR42_RS04425 0.38 -0.1
988,343 - RR42_RS04425 0.38 +0.7
988,343 - RR42_RS04425 0.38 -0.1
988,343 - RR42_RS04425 0.38 -0.6
988,343 - RR42_RS04425 0.38 -0.7
988,343 - RR42_RS04425 0.38 +0.6
988,381 + RR42_RS04425 0.42 -0.2
988,382 - RR42_RS04425 0.43 +0.1
988,393 + RR42_RS04425 0.44 +1.1
988,393 + RR42_RS04425 0.44 +0.5
988,393 + RR42_RS04425 0.44 -0.3
988,393 + RR42_RS04425 0.44 +0.4
988,393 + RR42_RS04425 0.44 +0.4
988,394 - RR42_RS04425 0.44 +0.8
988,394 - RR42_RS04425 0.44 +0.4
988,394 - RR42_RS04425 0.44 +1.1
988,430 - RR42_RS04425 0.48 -0.2
988,465 + RR42_RS04425 0.52 -0.1
988,465 + RR42_RS04425 0.52 +0.7

Or see this region's nucleotide sequence