Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS04185

Experiment: L-Serine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS04175 and RR42_RS04180 overlap by 64 nucleotidesRR42_RS04180 and RR42_RS04185 are separated by 38 nucleotides RR42_RS04175: RR42_RS04175 - hypothetical protein, at 922,643 to 923,086 _RS04175 RR42_RS04180: RR42_RS04180 - methyltransferase, at 923,023 to 923,757 _RS04180 RR42_RS04185: RR42_RS04185 - Fis family transcriptional regulator, at 923,796 to 925,172 _RS04185 Position (kb) 923 924 925 926Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 922.847 kb on - strand, within RR42_RS04175at 922.847 kb on - strand, within RR42_RS04175at 922.857 kb on + strand, within RR42_RS04175at 922.991 kb on - strand, within RR42_RS04175at 922.991 kb on - strand, within RR42_RS04175at 923.105 kb on - strand, within RR42_RS04180at 923.342 kb on + strand, within RR42_RS04180at 923.741 kb on + strandat 923.741 kb on + strandat 923.772 kb on - strandat 923.772 kb on - strandat 924.152 kb on + strand, within RR42_RS04185at 924.152 kb on + strand, within RR42_RS04185at 924.153 kb on - strand, within RR42_RS04185at 924.268 kb on + strand, within RR42_RS04185at 924.269 kb on - strand, within RR42_RS04185at 924.431 kb on + strand, within RR42_RS04185at 924.431 kb on + strand, within RR42_RS04185at 924.431 kb on + strand, within RR42_RS04185at 924.633 kb on + strand, within RR42_RS04185at 924.633 kb on + strand, within RR42_RS04185at 924.677 kb on + strand, within RR42_RS04185at 924.678 kb on - strand, within RR42_RS04185at 924.699 kb on + strand, within RR42_RS04185at 924.842 kb on + strand, within RR42_RS04185at 924.842 kb on + strand, within RR42_RS04185at 924.842 kb on + strand, within RR42_RS04185at 924.843 kb on - strand, within RR42_RS04185at 924.860 kb on - strand, within RR42_RS04185at 924.860 kb on - strand, within RR42_RS04185at 924.863 kb on - strand, within RR42_RS04185at 924.945 kb on - strand, within RR42_RS04185at 925.005 kb on + strand, within RR42_RS04185at 925.005 kb on + strand, within RR42_RS04185at 925.005 kb on + strand, within RR42_RS04185at 925.005 kb on + strand, within RR42_RS04185at 925.005 kb on + strand, within RR42_RS04185at 925.006 kb on - strand, within RR42_RS04185at 925.006 kb on - strand, within RR42_RS04185at 925.006 kb on - strand, within RR42_RS04185at 925.007 kb on + strand, within RR42_RS04185at 925.163 kb on - strandat 925.172 kb on + strandat 925.172 kb on + strandat 925.172 kb on + strandat 925.173 kb on - strandat 925.174 kb on + strandat 925.174 kb on + strandat 925.174 kb on + strandat 925.174 kb on + strandat 925.175 kb on - strandat 925.210 kb on - strandat 925.210 kb on - strandat 925.367 kb on + strandat 925.367 kb on + strandat 925.621 kb on + strandat 925.621 kb on + strandat 925.622 kb on - strandat 925.622 kb on - strandat 925.622 kb on - strandat 925.669 kb on + strandat 925.669 kb on + strandat 925.669 kb on + strandat 925.670 kb on - strandat 925.670 kb on - strandat 925.670 kb on - strandat 925.734 kb on + strandat 925.734 kb on + strandat 925.734 kb on + strandat 925.734 kb on + strandat 925.734 kb on + strandat 925.734 kb on + strandat 925.734 kb on + strandat 925.735 kb on - strandat 925.735 kb on - strandat 925.829 kb on - strandat 925.855 kb on + strandat 925.856 kb on - strandat 925.856 kb on - strandat 926.001 kb on + strandat 926.001 kb on + strandat 926.001 kb on + strandat 926.001 kb on + strandat 926.002 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
remove
922,847 - RR42_RS04175 0.46 -0.1
922,847 - RR42_RS04175 0.46 +0.3
922,857 + RR42_RS04175 0.48 -0.5
922,991 - RR42_RS04175 0.78 -0.7
922,991 - RR42_RS04175 0.78 +2.7
923,105 - RR42_RS04180 0.11 +0.1
923,342 + RR42_RS04180 0.43 -1.1
923,741 + +0.3
923,741 + +1.7
923,772 - -1.4
923,772 - -0.5
924,152 + RR42_RS04185 0.26 +0.1
924,152 + RR42_RS04185 0.26 -0.5
924,153 - RR42_RS04185 0.26 +0.2
924,268 + RR42_RS04185 0.34 -0.9
924,269 - RR42_RS04185 0.34 -0.6
924,431 + RR42_RS04185 0.46 +1.3
924,431 + RR42_RS04185 0.46 +0.2
924,431 + RR42_RS04185 0.46 -0.1
924,633 + RR42_RS04185 0.61 +0.6
924,633 + RR42_RS04185 0.61 -0.3
924,677 + RR42_RS04185 0.64 -0.6
924,678 - RR42_RS04185 0.64 -0.5
924,699 + RR42_RS04185 0.66 -0.3
924,842 + RR42_RS04185 0.76 +0.7
924,842 + RR42_RS04185 0.76 -0.5
924,842 + RR42_RS04185 0.76 -0.7
924,843 - RR42_RS04185 0.76 +0.8
924,860 - RR42_RS04185 0.77 +2.1
924,860 - RR42_RS04185 0.77 -0.0
924,863 - RR42_RS04185 0.77 +1.3
924,945 - RR42_RS04185 0.83 -0.8
925,005 + RR42_RS04185 0.88 -0.6
925,005 + RR42_RS04185 0.88 -0.4
925,005 + RR42_RS04185 0.88 -0.2
925,005 + RR42_RS04185 0.88 -1.0
925,005 + RR42_RS04185 0.88 -0.7
925,006 - RR42_RS04185 0.88 +1.2
925,006 - RR42_RS04185 0.88 -0.4
925,006 - RR42_RS04185 0.88 +0.3
925,007 + RR42_RS04185 0.88 -1.7
925,163 - +1.1
925,172 + -0.2
925,172 + +0.2
925,172 + +0.4
925,173 - -0.2
925,174 + +0.2
925,174 + +1.1
925,174 + -0.5
925,174 + +0.1
925,175 - +0.2
925,210 - -0.5
925,210 - +1.6
925,367 + +0.6
925,367 + +0.1
925,621 + +1.1
925,621 + -2.0
925,622 - -0.8
925,622 - -1.3
925,622 - -0.5
925,669 + +0.7
925,669 + +0.1
925,669 + -1.0
925,670 - -0.8
925,670 - +0.2
925,670 - -0.9
925,734 + -0.7
925,734 + +0.1
925,734 + -3.0
925,734 + -0.3
925,734 + -0.1
925,734 + +0.0
925,734 + -0.1
925,735 - -0.5
925,735 - +0.7
925,829 - -0.3
925,855 + -0.0
925,856 - +0.9
925,856 - +0.1
926,001 + -1.3
926,001 + +0.5
926,001 + +0.1
926,001 + -0.6
926,002 - +0.5

Or see this region's nucleotide sequence