Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04105 and RR42_RS04110 are separated by 25 nucleotides RR42_RS04110 and RR42_RS04115 overlap by 4 nucleotides RR42_RS04115 and RR42_RS04120 are separated by 9 nucleotides RR42_RS04120 and RR42_RS04125 are separated by 38 nucleotides RR42_RS04125 and RR42_RS04130 are separated by 34 nucleotides
RR42_RS04105: RR42_RS04105 - pilus assembly protein CpaE, at 908,648 to 909,841
_RS04105
RR42_RS04110: RR42_RS04110 - pilus assembly protein TadG, at 909,867 to 910,325
_RS04110
RR42_RS04115: RR42_RS04115 - pilus assembly protein TadG, at 910,322 to 910,831
_RS04115
RR42_RS04120: RR42_RS04120 - pilus assembly protein TadG, at 910,841 to 912,121
_RS04120
RR42_RS04125: RR42_RS04125 - lipoprotein, at 912,160 to 912,501
_RS04125
RR42_RS04130: RR42_RS04130 - secretin, at 912,536 to 914,383
_RS04130
Position (kb) 910
911
912
913 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 909.868 kb on + strand at 909.868 kb on + strand at 909.869 kb on - strand at 909.990 kb on + strand, within RR42_RS04110 at 910.196 kb on - strand, within RR42_RS04110 at 910.325 kb on + strand at 910.328 kb on + strand at 910.329 kb on - strand at 910.329 kb on - strand at 910.401 kb on + strand, within RR42_RS04115 at 910.401 kb on + strand, within RR42_RS04115 at 910.402 kb on - strand, within RR42_RS04115 at 910.405 kb on + strand, within RR42_RS04115 at 910.405 kb on + strand, within RR42_RS04115 at 910.406 kb on - strand, within RR42_RS04115 at 910.406 kb on - strand, within RR42_RS04115 at 910.600 kb on - strand, within RR42_RS04115 at 910.863 kb on - strand at 910.863 kb on - strand at 911.172 kb on + strand, within RR42_RS04120 at 911.219 kb on - strand, within RR42_RS04120 at 911.219 kb on - strand, within RR42_RS04120 at 911.496 kb on + strand, within RR42_RS04120 at 911.550 kb on + strand, within RR42_RS04120 at 911.550 kb on + strand, within RR42_RS04120 at 911.745 kb on + strand, within RR42_RS04120 at 911.746 kb on - strand, within RR42_RS04120 at 911.767 kb on - strand, within RR42_RS04120 at 911.814 kb on + strand, within RR42_RS04120 at 911.814 kb on + strand, within RR42_RS04120 at 911.873 kb on - strand, within RR42_RS04120 at 911.876 kb on + strand, within RR42_RS04120 at 912.260 kb on - strand, within RR42_RS04125 at 912.275 kb on + strand, within RR42_RS04125 at 912.276 kb on - strand, within RR42_RS04125 at 912.276 kb on - strand, within RR42_RS04125 at 912.729 kb on - strand, within RR42_RS04130 at 912.775 kb on + strand, within RR42_RS04130 at 912.900 kb on + strand, within RR42_RS04130 at 912.901 kb on - strand, within RR42_RS04130 at 912.922 kb on + strand, within RR42_RS04130 at 913.082 kb on + strand, within RR42_RS04130
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 909,868 + -3.2 909,868 + +0.1 909,869 - -0.3 909,990 + RR42_RS04110 0.27 -0.8 910,196 - RR42_RS04110 0.72 +0.7 910,325 + +1.9 910,328 + -0.9 910,329 - +0.2 910,329 - +0.5 910,401 + RR42_RS04115 0.15 +1.7 910,401 + RR42_RS04115 0.15 -0.0 910,402 - RR42_RS04115 0.16 +0.6 910,405 + RR42_RS04115 0.16 +0.3 910,405 + RR42_RS04115 0.16 -0.9 910,406 - RR42_RS04115 0.16 -0.5 910,406 - RR42_RS04115 0.16 -0.8 910,600 - RR42_RS04115 0.55 -0.2 910,863 - -0.3 910,863 - +0.2 911,172 + RR42_RS04120 0.26 +0.7 911,219 - RR42_RS04120 0.30 +1.1 911,219 - RR42_RS04120 0.30 -0.4 911,496 + RR42_RS04120 0.51 -1.2 911,550 + RR42_RS04120 0.55 -0.7 911,550 + RR42_RS04120 0.55 +0.3 911,745 + RR42_RS04120 0.71 +0.1 911,746 - RR42_RS04120 0.71 -0.2 911,767 - RR42_RS04120 0.72 -0.1 911,814 + RR42_RS04120 0.76 -0.5 911,814 + RR42_RS04120 0.76 -1.2 911,873 - RR42_RS04120 0.81 -0.3 911,876 + RR42_RS04120 0.81 -0.9 912,260 - RR42_RS04125 0.29 -0.3 912,275 + RR42_RS04125 0.34 -0.9 912,276 - RR42_RS04125 0.34 +0.1 912,276 - RR42_RS04125 0.34 -0.2 912,729 - RR42_RS04130 0.10 -1.1 912,775 + RR42_RS04130 0.13 +0.8 912,900 + RR42_RS04130 0.20 +0.5 912,901 - RR42_RS04130 0.20 +0.9 912,922 + RR42_RS04130 0.21 -0.1 913,082 + RR42_RS04130 0.30 -0.6
Or see this region's nucleotide sequence