Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03180 and RR42_RS03185 are separated by 153 nucleotides RR42_RS03185 and RR42_RS03190 overlap by 4 nucleotides RR42_RS03190 and RR42_RS03195 are separated by 40 nucleotides
RR42_RS03180: RR42_RS03180 - ABC transporter substrate-binding protein, at 704,625 to 705,665
_RS03180
RR42_RS03185: RR42_RS03185 - branched-chain amino acid permease, at 705,819 to 706,649
_RS03185
RR42_RS03190: RR42_RS03190 - branched-chain amino acid transporter, at 706,646 to 706,969
_RS03190
RR42_RS03195: RR42_RS03195 - LuxR family transcriptional regulator, at 707,010 to 708,137
_RS03195
Position (kb) 705
706
707 Strain fitness (log2 ratio) -2
-1
0
1 at 704.880 kb on + strand, within RR42_RS03180 at 704.880 kb on + strand, within RR42_RS03180 at 704.880 kb on + strand, within RR42_RS03180 at 704.880 kb on + strand, within RR42_RS03180 at 704.881 kb on - strand, within RR42_RS03180 at 704.881 kb on - strand, within RR42_RS03180 at 704.881 kb on - strand, within RR42_RS03180 at 704.881 kb on - strand, within RR42_RS03180 at 705.000 kb on + strand, within RR42_RS03180 at 705.000 kb on + strand, within RR42_RS03180 at 705.150 kb on + strand, within RR42_RS03180 at 705.151 kb on - strand, within RR42_RS03180 at 705.151 kb on - strand, within RR42_RS03180 at 705.156 kb on + strand, within RR42_RS03180 at 705.156 kb on + strand, within RR42_RS03180 at 705.157 kb on - strand, within RR42_RS03180 at 705.157 kb on - strand, within RR42_RS03180 at 705.157 kb on - strand, within RR42_RS03180 at 705.157 kb on - strand, within RR42_RS03180 at 705.227 kb on + strand, within RR42_RS03180 at 705.227 kb on + strand, within RR42_RS03180 at 705.227 kb on + strand, within RR42_RS03180 at 705.227 kb on + strand, within RR42_RS03180 at 705.243 kb on + strand, within RR42_RS03180 at 705.243 kb on + strand, within RR42_RS03180 at 705.243 kb on + strand, within RR42_RS03180 at 705.330 kb on + strand, within RR42_RS03180 at 705.331 kb on - strand, within RR42_RS03180 at 705.656 kb on + strand at 705.656 kb on + strand at 705.656 kb on + strand at 705.657 kb on - strand at 705.657 kb on - strand at 705.666 kb on + strand at 705.666 kb on + strand at 705.666 kb on + strand at 705.667 kb on - strand at 705.688 kb on + strand at 705.688 kb on + strand at 705.688 kb on + strand at 705.688 kb on + strand at 705.689 kb on - strand at 705.689 kb on - strand at 705.695 kb on - strand at 705.695 kb on - strand at 705.718 kb on + strand at 705.730 kb on + strand at 705.730 kb on + strand at 705.730 kb on + strand at 705.730 kb on + strand at 705.731 kb on - strand at 705.752 kb on + strand at 705.753 kb on - strand at 705.753 kb on - strand at 705.753 kb on - strand at 705.753 kb on - strand at 705.753 kb on - strand at 705.754 kb on + strand at 705.754 kb on + strand at 705.754 kb on + strand at 705.755 kb on - strand at 705.755 kb on - strand at 705.755 kb on - strand at 705.818 kb on + strand at 705.890 kb on + strand at 705.891 kb on - strand at 705.891 kb on - strand at 705.907 kb on - strand, within RR42_RS03185 at 706.018 kb on - strand, within RR42_RS03185 at 706.227 kb on + strand, within RR42_RS03185 at 706.263 kb on + strand, within RR42_RS03185 at 706.772 kb on + strand, within RR42_RS03190 at 706.856 kb on + strand, within RR42_RS03190 at 706.856 kb on + strand, within RR42_RS03190 at 706.856 kb on + strand, within RR42_RS03190 at 706.856 kb on + strand, within RR42_RS03190 at 706.856 kb on + strand, within RR42_RS03190 at 706.856 kb on + strand, within RR42_RS03190 at 706.857 kb on - strand, within RR42_RS03190 at 706.857 kb on - strand, within RR42_RS03190 at 706.857 kb on - strand, within RR42_RS03190 at 706.857 kb on - strand, within RR42_RS03190 at 706.857 kb on - strand, within RR42_RS03190 at 706.893 kb on - strand, within RR42_RS03190 at 706.943 kb on + strand at 706.943 kb on + strand at 706.943 kb on + strand at 706.943 kb on + strand at 707.236 kb on + strand, within RR42_RS03195 at 707.237 kb on - strand, within RR42_RS03195 at 707.237 kb on - strand, within RR42_RS03195
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 704,880 + RR42_RS03180 0.24 +0.4 704,880 + RR42_RS03180 0.24 -0.8 704,880 + RR42_RS03180 0.24 -0.7 704,880 + RR42_RS03180 0.24 +0.7 704,881 - RR42_RS03180 0.25 +1.2 704,881 - RR42_RS03180 0.25 +0.3 704,881 - RR42_RS03180 0.25 +0.3 704,881 - RR42_RS03180 0.25 -0.3 705,000 + RR42_RS03180 0.36 -0.6 705,000 + RR42_RS03180 0.36 +0.6 705,150 + RR42_RS03180 0.50 -2.4 705,151 - RR42_RS03180 0.51 +0.0 705,151 - RR42_RS03180 0.51 +0.7 705,156 + RR42_RS03180 0.51 -1.7 705,156 + RR42_RS03180 0.51 +0.3 705,157 - RR42_RS03180 0.51 +0.0 705,157 - RR42_RS03180 0.51 +0.0 705,157 - RR42_RS03180 0.51 +1.0 705,157 - RR42_RS03180 0.51 -1.0 705,227 + RR42_RS03180 0.58 +1.2 705,227 + RR42_RS03180 0.58 -0.4 705,227 + RR42_RS03180 0.58 +0.6 705,227 + RR42_RS03180 0.58 -0.1 705,243 + RR42_RS03180 0.59 -0.4 705,243 + RR42_RS03180 0.59 -0.3 705,243 + RR42_RS03180 0.59 -0.6 705,330 + RR42_RS03180 0.68 -0.8 705,331 - RR42_RS03180 0.68 +0.2 705,656 + +0.5 705,656 + -0.1 705,656 + -1.7 705,657 - +0.2 705,657 - +0.2 705,666 + -0.3 705,666 + -0.1 705,666 + -0.2 705,667 - -0.7 705,688 + +0.4 705,688 + -0.3 705,688 + +0.2 705,688 + +0.5 705,689 - -0.2 705,689 - -1.2 705,695 - +0.3 705,695 - +0.2 705,718 + -1.4 705,730 + -0.6 705,730 + +0.0 705,730 + +0.2 705,730 + +1.3 705,731 - -0.0 705,752 + -0.8 705,753 - +0.2 705,753 - -0.7 705,753 - -0.3 705,753 - -1.1 705,753 - -0.5 705,754 + -0.0 705,754 + +0.6 705,754 + +0.1 705,755 - -1.9 705,755 - -0.1 705,755 - -0.1 705,818 + -0.1 705,890 + +0.4 705,891 - -1.4 705,891 - +0.5 705,907 - RR42_RS03185 0.11 +0.8 706,018 - RR42_RS03185 0.24 -0.6 706,227 + RR42_RS03185 0.49 +1.2 706,263 + RR42_RS03185 0.53 -0.8 706,772 + RR42_RS03190 0.39 -0.8 706,856 + RR42_RS03190 0.65 -1.4 706,856 + RR42_RS03190 0.65 +0.5 706,856 + RR42_RS03190 0.65 +0.8 706,856 + RR42_RS03190 0.65 -0.8 706,856 + RR42_RS03190 0.65 +0.2 706,856 + RR42_RS03190 0.65 +0.9 706,857 - RR42_RS03190 0.65 +0.9 706,857 - RR42_RS03190 0.65 +1.2 706,857 - RR42_RS03190 0.65 +0.3 706,857 - RR42_RS03190 0.65 +0.1 706,857 - RR42_RS03190 0.65 +0.4 706,893 - RR42_RS03190 0.76 +0.7 706,943 + -0.9 706,943 + -0.1 706,943 + -1.3 706,943 + -0.6 707,236 + RR42_RS03195 0.20 -0.8 707,237 - RR42_RS03195 0.20 -0.2 707,237 - RR42_RS03195 0.20 -0.4
Or see this region's nucleotide sequence