Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02795 and RR42_RS02800 are separated by 1 nucleotides RR42_RS02800 and RR42_RS02805 are separated by 116 nucleotides RR42_RS02805 and RR42_RS02810 overlap by 4 nucleotides RR42_RS02810 and RR42_RS02815 are separated by 17 nucleotides
RR42_RS02795: RR42_RS02795 - multidrug DMT transporter permease, at 623,262 to 624,170
_RS02795
RR42_RS02800: RR42_RS02800 - glyoxalase I, at 624,172 to 624,579
_RS02800
RR42_RS02805: RR42_RS02805 - metal-dependent hydrolase, at 624,696 to 625,580
_RS02805
RR42_RS02810: RR42_RS02810 - acyl-phosphate glycerol 3-phosphate acyltransferase, at 625,577 to 626,329
_RS02810
RR42_RS02815: RR42_RS02815 - D,D-heptose 1,7-bisphosphate phosphatase, at 626,347 to 626,925
_RS02815
Position (kb) 624
625
626 Strain fitness (log2 ratio) -2
-1
0
1
2 at 623.828 kb on + strand, within RR42_RS02795 at 624.224 kb on + strand, within RR42_RS02800 at 624.366 kb on - strand, within RR42_RS02800 at 624.383 kb on + strand, within RR42_RS02800 at 624.398 kb on + strand, within RR42_RS02800 at 624.398 kb on + strand, within RR42_RS02800 at 624.399 kb on - strand, within RR42_RS02800 at 624.402 kb on + strand, within RR42_RS02800 at 624.402 kb on + strand, within RR42_RS02800 at 624.403 kb on - strand, within RR42_RS02800 at 624.404 kb on + strand, within RR42_RS02800 at 624.404 kb on + strand, within RR42_RS02800 at 624.405 kb on - strand, within RR42_RS02800 at 624.405 kb on - strand, within RR42_RS02800 at 624.405 kb on - strand, within RR42_RS02800 at 624.464 kb on + strand, within RR42_RS02800 at 624.464 kb on + strand, within RR42_RS02800 at 624.464 kb on + strand, within RR42_RS02800 at 624.465 kb on - strand, within RR42_RS02800 at 624.465 kb on - strand, within RR42_RS02800 at 624.465 kb on - strand, within RR42_RS02800 at 624.521 kb on + strand, within RR42_RS02800 at 624.522 kb on - strand, within RR42_RS02800 at 624.522 kb on - strand, within RR42_RS02800 at 624.597 kb on - strand at 624.619 kb on - strand at 624.641 kb on + strand at 624.641 kb on + strand at 624.642 kb on - strand at 624.698 kb on - strand at 624.951 kb on - strand, within RR42_RS02805 at 624.976 kb on + strand, within RR42_RS02805 at 624.976 kb on + strand, within RR42_RS02805 at 624.977 kb on - strand, within RR42_RS02805 at 624.980 kb on + strand, within RR42_RS02805 at 624.981 kb on - strand, within RR42_RS02805 at 624.981 kb on - strand, within RR42_RS02805 at 625.375 kb on + strand, within RR42_RS02805 at 625.781 kb on + strand, within RR42_RS02810 at 625.782 kb on - strand, within RR42_RS02810 at 625.828 kb on - strand, within RR42_RS02810 at 626.061 kb on + strand, within RR42_RS02810
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 623,828 + RR42_RS02795 0.62 +1.2 624,224 + RR42_RS02800 0.13 +0.2 624,366 - RR42_RS02800 0.48 +0.1 624,383 + RR42_RS02800 0.52 -2.1 624,398 + RR42_RS02800 0.55 +0.4 624,398 + RR42_RS02800 0.55 -0.7 624,399 - RR42_RS02800 0.56 -0.3 624,402 + RR42_RS02800 0.56 +0.2 624,402 + RR42_RS02800 0.56 -0.6 624,403 - RR42_RS02800 0.57 -0.3 624,404 + RR42_RS02800 0.57 -0.9 624,404 + RR42_RS02800 0.57 +0.3 624,405 - RR42_RS02800 0.57 -0.4 624,405 - RR42_RS02800 0.57 -0.3 624,405 - RR42_RS02800 0.57 -1.3 624,464 + RR42_RS02800 0.72 -1.3 624,464 + RR42_RS02800 0.72 -0.3 624,464 + RR42_RS02800 0.72 -0.5 624,465 - RR42_RS02800 0.72 +0.6 624,465 - RR42_RS02800 0.72 +0.2 624,465 - RR42_RS02800 0.72 -0.3 624,521 + RR42_RS02800 0.86 -0.9 624,522 - RR42_RS02800 0.86 +2.2 624,522 - RR42_RS02800 0.86 +0.2 624,597 - +0.6 624,619 - +0.3 624,641 + -0.2 624,641 + +0.9 624,642 - -0.1 624,698 - -0.8 624,951 - RR42_RS02805 0.29 -0.3 624,976 + RR42_RS02805 0.32 +0.2 624,976 + RR42_RS02805 0.32 -0.5 624,977 - RR42_RS02805 0.32 -1.6 624,980 + RR42_RS02805 0.32 -0.5 624,981 - RR42_RS02805 0.32 -0.9 624,981 - RR42_RS02805 0.32 -0.1 625,375 + RR42_RS02805 0.77 -0.2 625,781 + RR42_RS02810 0.27 +0.9 625,782 - RR42_RS02810 0.27 +0.2 625,828 - RR42_RS02810 0.33 -1.2 626,061 + RR42_RS02810 0.64 +0.2
Or see this region's nucleotide sequence