Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02750 and RR42_RS02755 are separated by 17 nucleotides RR42_RS02755 and RR42_RS02760 overlap by 4 nucleotides RR42_RS02760 and RR42_RS02765 are separated by 31 nucleotides
RR42_RS02750: RR42_RS02750 - mannose-1-phosphate guanylyltransferase, at 612,428 to 613,168
_RS02750
RR42_RS02755: RR42_RS02755 - branched-chain amino acid transporter, at 613,186 to 613,524
_RS02755
RR42_RS02760: RR42_RS02760 - branched-chain amino acid ABC transporter permease, at 613,521 to 614,273
_RS02760
RR42_RS02765: RR42_RS02765 - aminoglycoside phosphotransferase, at 614,305 to 615,339
_RS02765
Position (kb) 613
614
615 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 612.570 kb on + strand, within RR42_RS02750 at 612.571 kb on - strand, within RR42_RS02750 at 612.573 kb on + strand, within RR42_RS02750 at 612.630 kb on + strand, within RR42_RS02750 at 612.630 kb on + strand, within RR42_RS02750 at 612.630 kb on + strand, within RR42_RS02750 at 612.630 kb on + strand, within RR42_RS02750 at 612.631 kb on - strand, within RR42_RS02750 at 612.640 kb on + strand, within RR42_RS02750 at 612.819 kb on + strand, within RR42_RS02750 at 612.819 kb on + strand, within RR42_RS02750 at 612.819 kb on + strand, within RR42_RS02750 at 612.942 kb on + strand, within RR42_RS02750 at 612.942 kb on + strand, within RR42_RS02750 at 613.187 kb on + strand at 613.188 kb on - strand at 613.188 kb on - strand at 613.188 kb on - strand at 613.211 kb on + strand at 613.211 kb on + strand at 613.211 kb on + strand at 613.211 kb on + strand at 613.212 kb on - strand at 613.656 kb on + strand, within RR42_RS02760 at 613.656 kb on + strand, within RR42_RS02760 at 613.927 kb on + strand, within RR42_RS02760 at 613.927 kb on + strand, within RR42_RS02760 at 613.927 kb on + strand, within RR42_RS02760 at 613.927 kb on + strand, within RR42_RS02760 at 613.928 kb on - strand, within RR42_RS02760 at 614.161 kb on + strand, within RR42_RS02760 at 614.161 kb on + strand, within RR42_RS02760 at 614.161 kb on + strand, within RR42_RS02760 at 614.162 kb on - strand, within RR42_RS02760 at 614.315 kb on + strand at 614.315 kb on + strand at 614.360 kb on - strand at 614.360 kb on - strand at 614.381 kb on + strand at 614.406 kb on - strand at 614.459 kb on + strand, within RR42_RS02765 at 614.583 kb on - strand, within RR42_RS02765 at 614.625 kb on + strand, within RR42_RS02765 at 614.625 kb on + strand, within RR42_RS02765 at 614.626 kb on - strand, within RR42_RS02765 at 614.626 kb on - strand, within RR42_RS02765 at 614.627 kb on + strand, within RR42_RS02765 at 614.627 kb on + strand, within RR42_RS02765 at 614.627 kb on + strand, within RR42_RS02765 at 614.627 kb on + strand, within RR42_RS02765 at 614.627 kb on + strand, within RR42_RS02765 at 614.628 kb on - strand, within RR42_RS02765 at 614.628 kb on - strand, within RR42_RS02765 at 614.628 kb on - strand, within RR42_RS02765 at 614.628 kb on - strand, within RR42_RS02765 at 614.628 kb on - strand, within RR42_RS02765 at 614.657 kb on + strand, within RR42_RS02765 at 614.657 kb on + strand, within RR42_RS02765 at 614.657 kb on + strand, within RR42_RS02765 at 614.657 kb on + strand, within RR42_RS02765 at 614.657 kb on + strand, within RR42_RS02765 at 614.657 kb on + strand, within RR42_RS02765 at 614.658 kb on - strand, within RR42_RS02765 at 614.658 kb on - strand, within RR42_RS02765 at 614.658 kb on - strand, within RR42_RS02765 at 614.658 kb on - strand, within RR42_RS02765 at 614.658 kb on - strand, within RR42_RS02765 at 614.658 kb on - strand, within RR42_RS02765 at 614.661 kb on + strand, within RR42_RS02765 at 614.662 kb on - strand, within RR42_RS02765 at 614.662 kb on - strand, within RR42_RS02765 at 614.745 kb on - strand, within RR42_RS02765 at 614.759 kb on + strand, within RR42_RS02765 at 614.759 kb on + strand, within RR42_RS02765 at 614.759 kb on + strand, within RR42_RS02765 at 614.759 kb on + strand, within RR42_RS02765 at 614.759 kb on + strand, within RR42_RS02765 at 614.759 kb on + strand, within RR42_RS02765 at 614.759 kb on + strand, within RR42_RS02765 at 614.760 kb on - strand, within RR42_RS02765 at 614.760 kb on - strand, within RR42_RS02765 at 614.760 kb on - strand, within RR42_RS02765 at 614.760 kb on - strand, within RR42_RS02765 at 614.760 kb on - strand, within RR42_RS02765 at 614.760 kb on - strand, within RR42_RS02765 at 614.864 kb on + strand, within RR42_RS02765 at 614.864 kb on + strand, within RR42_RS02765 at 614.865 kb on - strand, within RR42_RS02765 at 614.978 kb on + strand, within RR42_RS02765 at 615.017 kb on + strand, within RR42_RS02765 at 615.017 kb on + strand, within RR42_RS02765 at 615.017 kb on + strand, within RR42_RS02765 at 615.017 kb on + strand, within RR42_RS02765 at 615.017 kb on + strand, within RR42_RS02765 at 615.018 kb on - strand, within RR42_RS02765 at 615.018 kb on - strand, within RR42_RS02765 at 615.018 kb on - strand, within RR42_RS02765 at 615.018 kb on - strand, within RR42_RS02765 at 615.018 kb on - strand, within RR42_RS02765 at 615.018 kb on - strand, within RR42_RS02765 at 615.018 kb on - strand, within RR42_RS02765 at 615.018 kb on - strand, within RR42_RS02765 at 615.018 kb on - strand, within RR42_RS02765
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 612,570 + RR42_RS02750 0.19 +0.1 612,571 - RR42_RS02750 0.19 +0.3 612,573 + RR42_RS02750 0.20 +0.3 612,630 + RR42_RS02750 0.27 -0.2 612,630 + RR42_RS02750 0.27 +1.2 612,630 + RR42_RS02750 0.27 -0.6 612,630 + RR42_RS02750 0.27 +0.2 612,631 - RR42_RS02750 0.27 -0.3 612,640 + RR42_RS02750 0.29 -1.5 612,819 + RR42_RS02750 0.53 -1.2 612,819 + RR42_RS02750 0.53 -0.4 612,819 + RR42_RS02750 0.53 -0.2 612,942 + RR42_RS02750 0.69 +0.3 612,942 + RR42_RS02750 0.69 -1.0 613,187 + +0.2 613,188 - +0.3 613,188 - +1.2 613,188 - -0.0 613,211 + +0.6 613,211 + +1.6 613,211 + +0.8 613,211 + +0.2 613,212 - +0.9 613,656 + RR42_RS02760 0.18 +0.7 613,656 + RR42_RS02760 0.18 +0.2 613,927 + RR42_RS02760 0.54 +1.1 613,927 + RR42_RS02760 0.54 +0.4 613,927 + RR42_RS02760 0.54 +0.9 613,927 + RR42_RS02760 0.54 +0.5 613,928 - RR42_RS02760 0.54 -0.3 614,161 + RR42_RS02760 0.85 +0.7 614,161 + RR42_RS02760 0.85 -3.3 614,161 + RR42_RS02760 0.85 +1.2 614,162 - RR42_RS02760 0.85 +0.2 614,315 + -0.5 614,315 + +0.5 614,360 - -1.3 614,360 - -0.5 614,381 + -0.4 614,406 - -0.3 614,459 + RR42_RS02765 0.15 -1.2 614,583 - RR42_RS02765 0.27 -0.3 614,625 + RR42_RS02765 0.31 -0.0 614,625 + RR42_RS02765 0.31 -0.3 614,626 - RR42_RS02765 0.31 -0.0 614,626 - RR42_RS02765 0.31 -0.8 614,627 + RR42_RS02765 0.31 -0.6 614,627 + RR42_RS02765 0.31 -0.3 614,627 + RR42_RS02765 0.31 -0.9 614,627 + RR42_RS02765 0.31 +0.5 614,627 + RR42_RS02765 0.31 -0.2 614,628 - RR42_RS02765 0.31 +0.3 614,628 - RR42_RS02765 0.31 -0.5 614,628 - RR42_RS02765 0.31 -0.3 614,628 - RR42_RS02765 0.31 +0.8 614,628 - RR42_RS02765 0.31 -1.1 614,657 + RR42_RS02765 0.34 +1.7 614,657 + RR42_RS02765 0.34 -0.3 614,657 + RR42_RS02765 0.34 -0.1 614,657 + RR42_RS02765 0.34 -0.9 614,657 + RR42_RS02765 0.34 -0.1 614,657 + RR42_RS02765 0.34 +0.2 614,658 - RR42_RS02765 0.34 -0.1 614,658 - RR42_RS02765 0.34 -0.6 614,658 - RR42_RS02765 0.34 +0.4 614,658 - RR42_RS02765 0.34 -0.7 614,658 - RR42_RS02765 0.34 -0.8 614,658 - RR42_RS02765 0.34 +1.0 614,661 + RR42_RS02765 0.34 -1.6 614,662 - RR42_RS02765 0.34 -1.1 614,662 - RR42_RS02765 0.34 -0.0 614,745 - RR42_RS02765 0.43 +0.0 614,759 + RR42_RS02765 0.44 -0.7 614,759 + RR42_RS02765 0.44 -0.8 614,759 + RR42_RS02765 0.44 -0.1 614,759 + RR42_RS02765 0.44 -1.6 614,759 + RR42_RS02765 0.44 -1.4 614,759 + RR42_RS02765 0.44 -2.2 614,759 + RR42_RS02765 0.44 -0.6 614,760 - RR42_RS02765 0.44 +0.8 614,760 - RR42_RS02765 0.44 -0.7 614,760 - RR42_RS02765 0.44 -2.0 614,760 - RR42_RS02765 0.44 -0.6 614,760 - RR42_RS02765 0.44 -0.2 614,760 - RR42_RS02765 0.44 +0.6 614,864 + RR42_RS02765 0.54 -3.3 614,864 + RR42_RS02765 0.54 -1.3 614,865 - RR42_RS02765 0.54 +0.2 614,978 + RR42_RS02765 0.65 -0.9 615,017 + RR42_RS02765 0.69 -0.1 615,017 + RR42_RS02765 0.69 -1.3 615,017 + RR42_RS02765 0.69 -1.0 615,017 + RR42_RS02765 0.69 -2.1 615,017 + RR42_RS02765 0.69 -1.1 615,018 - RR42_RS02765 0.69 +0.2 615,018 - RR42_RS02765 0.69 -0.0 615,018 - RR42_RS02765 0.69 -0.2 615,018 - RR42_RS02765 0.69 -0.5 615,018 - RR42_RS02765 0.69 +0.4 615,018 - RR42_RS02765 0.69 +1.0 615,018 - RR42_RS02765 0.69 -0.5 615,018 - RR42_RS02765 0.69 -0.9 615,018 - RR42_RS02765 0.69 +0.6
Or see this region's nucleotide sequence