Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02380 and RR42_RS02385 are separated by 70 nucleotides RR42_RS02385 and RR42_RS02390 are separated by 170 nucleotides
RR42_RS02380: RR42_RS02380 - FAD-linked oxidase, at 533,553 to 537,527
_RS02380
RR42_RS02385: RR42_RS02385 - hydrolase, at 537,598 to 538,032
_RS02385
RR42_RS02390: RR42_RS02390 - ABC transporter ATP-binding protein, at 538,203 to 540,086
_RS02390
Position (kb) 537
538
539 Strain fitness (log2 ratio) -1
0
1
2 at 536.740 kb on - strand, within RR42_RS02380 at 536.813 kb on - strand, within RR42_RS02380 at 536.813 kb on - strand, within RR42_RS02380 at 536.841 kb on + strand, within RR42_RS02380 at 536.950 kb on - strand, within RR42_RS02380 at 536.950 kb on - strand, within RR42_RS02380 at 536.992 kb on - strand, within RR42_RS02380 at 536.992 kb on - strand, within RR42_RS02380 at 537.061 kb on - strand, within RR42_RS02380 at 537.108 kb on + strand, within RR42_RS02380 at 537.109 kb on - strand, within RR42_RS02380 at 537.114 kb on + strand, within RR42_RS02380 at 537.114 kb on + strand, within RR42_RS02380 at 537.115 kb on - strand, within RR42_RS02380 at 537.115 kb on - strand, within RR42_RS02380 at 537.115 kb on - strand, within RR42_RS02380 at 537.115 kb on - strand, within RR42_RS02380 at 537.396 kb on + strand at 537.859 kb on - strand, within RR42_RS02385 at 537.882 kb on + strand, within RR42_RS02385 at 537.883 kb on - strand, within RR42_RS02385 at 538.130 kb on - strand at 538.130 kb on - strand at 538.311 kb on + strand at 538.311 kb on + strand at 538.312 kb on - strand at 538.386 kb on + strand at 538.387 kb on - strand at 538.387 kb on - strand at 538.388 kb on + strand at 538.388 kb on + strand at 538.389 kb on - strand at 538.389 kb on - strand at 538.389 kb on - strand at 538.426 kb on - strand, within RR42_RS02390 at 538.449 kb on + strand, within RR42_RS02390 at 538.449 kb on + strand, within RR42_RS02390 at 538.450 kb on - strand, within RR42_RS02390 at 538.450 kb on - strand, within RR42_RS02390 at 538.502 kb on + strand, within RR42_RS02390 at 538.503 kb on - strand, within RR42_RS02390 at 538.516 kb on + strand, within RR42_RS02390 at 538.517 kb on - strand, within RR42_RS02390 at 538.517 kb on - strand, within RR42_RS02390 at 538.517 kb on - strand, within RR42_RS02390 at 538.527 kb on + strand, within RR42_RS02390 at 538.527 kb on + strand, within RR42_RS02390 at 538.528 kb on - strand, within RR42_RS02390 at 538.530 kb on + strand, within RR42_RS02390 at 538.530 kb on + strand, within RR42_RS02390 at 538.530 kb on + strand, within RR42_RS02390 at 538.530 kb on + strand, within RR42_RS02390 at 538.531 kb on - strand, within RR42_RS02390 at 538.608 kb on + strand, within RR42_RS02390 at 538.608 kb on + strand, within RR42_RS02390 at 538.608 kb on + strand, within RR42_RS02390 at 538.612 kb on - strand, within RR42_RS02390 at 538.618 kb on + strand, within RR42_RS02390 at 538.619 kb on - strand, within RR42_RS02390 at 538.619 kb on - strand, within RR42_RS02390 at 538.815 kb on + strand, within RR42_RS02390 at 538.816 kb on - strand, within RR42_RS02390 at 538.817 kb on + strand, within RR42_RS02390 at 538.817 kb on + strand, within RR42_RS02390 at 538.817 kb on + strand, within RR42_RS02390 at 538.817 kb on + strand, within RR42_RS02390 at 538.817 kb on + strand, within RR42_RS02390 at 538.818 kb on - strand, within RR42_RS02390 at 538.818 kb on - strand, within RR42_RS02390 at 538.818 kb on - strand, within RR42_RS02390
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 536,740 - RR42_RS02380 0.80 -1.1 536,813 - RR42_RS02380 0.82 -0.4 536,813 - RR42_RS02380 0.82 +0.7 536,841 + RR42_RS02380 0.83 -0.6 536,950 - RR42_RS02380 0.85 +1.2 536,950 - RR42_RS02380 0.85 -0.9 536,992 - RR42_RS02380 0.87 +0.5 536,992 - RR42_RS02380 0.87 -0.1 537,061 - RR42_RS02380 0.88 +0.4 537,108 + RR42_RS02380 0.89 +0.1 537,109 - RR42_RS02380 0.89 +0.6 537,114 + RR42_RS02380 0.90 -0.2 537,114 + RR42_RS02380 0.90 +1.8 537,115 - RR42_RS02380 0.90 +0.9 537,115 - RR42_RS02380 0.90 +0.7 537,115 - RR42_RS02380 0.90 -0.1 537,115 - RR42_RS02380 0.90 -0.5 537,396 + -0.6 537,859 - RR42_RS02385 0.60 -1.0 537,882 + RR42_RS02385 0.65 -1.3 537,883 - RR42_RS02385 0.66 +0.5 538,130 - +0.1 538,130 - +0.2 538,311 + +1.0 538,311 + -1.2 538,312 - -0.0 538,386 + +0.6 538,387 - -1.7 538,387 - +1.4 538,388 + -1.3 538,388 + +0.1 538,389 - +0.9 538,389 - -0.3 538,389 - -0.5 538,426 - RR42_RS02390 0.12 -0.0 538,449 + RR42_RS02390 0.13 +0.2 538,449 + RR42_RS02390 0.13 +1.0 538,450 - RR42_RS02390 0.13 -0.6 538,450 - RR42_RS02390 0.13 -0.1 538,502 + RR42_RS02390 0.16 -0.2 538,503 - RR42_RS02390 0.16 +0.6 538,516 + RR42_RS02390 0.17 +0.3 538,517 - RR42_RS02390 0.17 -0.1 538,517 - RR42_RS02390 0.17 -0.4 538,517 - RR42_RS02390 0.17 +0.3 538,527 + RR42_RS02390 0.17 +0.2 538,527 + RR42_RS02390 0.17 -0.8 538,528 - RR42_RS02390 0.17 -0.6 538,530 + RR42_RS02390 0.17 +0.2 538,530 + RR42_RS02390 0.17 +0.3 538,530 + RR42_RS02390 0.17 +0.7 538,530 + RR42_RS02390 0.17 +1.2 538,531 - RR42_RS02390 0.17 -1.3 538,608 + RR42_RS02390 0.21 -0.0 538,608 + RR42_RS02390 0.21 -0.4 538,608 + RR42_RS02390 0.21 +0.2 538,612 - RR42_RS02390 0.22 -0.3 538,618 + RR42_RS02390 0.22 +0.4 538,619 - RR42_RS02390 0.22 +1.1 538,619 - RR42_RS02390 0.22 -0.0 538,815 + RR42_RS02390 0.32 +0.8 538,816 - RR42_RS02390 0.33 -1.0 538,817 + RR42_RS02390 0.33 -0.7 538,817 + RR42_RS02390 0.33 -0.3 538,817 + RR42_RS02390 0.33 -0.1 538,817 + RR42_RS02390 0.33 +0.4 538,817 + RR42_RS02390 0.33 -0.3 538,818 - RR42_RS02390 0.33 +0.2 538,818 - RR42_RS02390 0.33 +0.0 538,818 - RR42_RS02390 0.33 +0.4
Or see this region's nucleotide sequence