Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00490 and RR42_RS00495 are separated by 332 nucleotides RR42_RS00495 and RR42_RS00500 are separated by 1 nucleotides RR42_RS00500 and RR42_RS00505 are separated by 227 nucleotides
RR42_RS00490: RR42_RS00490 - potassium-transporting ATPase subunit C, at 127,182 to 127,799
_RS00490
RR42_RS00495: RR42_RS00495 - histidine kinase, at 128,132 to 131,065
_RS00495
RR42_RS00500: RR42_RS00500 - transcriptional regulator, at 131,067 to 131,762
_RS00500
RR42_RS00505: RR42_RS00505 - histidine kinase, at 131,990 to 134,026
_RS00505
Position (kb) 128
129
130
131
132 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 127.167 kb on + strand at 127.167 kb on + strand at 127.187 kb on + strand at 127.188 kb on - strand at 127.417 kb on - strand, within RR42_RS00490 at 127.417 kb on - strand, within RR42_RS00490 at 127.455 kb on + strand, within RR42_RS00490 at 127.456 kb on - strand, within RR42_RS00490 at 127.456 kb on - strand, within RR42_RS00490 at 127.825 kb on + strand at 127.940 kb on - strand at 128.078 kb on + strand at 128.079 kb on - strand at 128.240 kb on + strand at 128.240 kb on + strand at 128.757 kb on - strand, within RR42_RS00495 at 128.757 kb on - strand, within RR42_RS00495 at 129.137 kb on - strand, within RR42_RS00495 at 129.158 kb on + strand, within RR42_RS00495 at 129.391 kb on + strand, within RR42_RS00495 at 129.713 kb on + strand, within RR42_RS00495 at 129.714 kb on - strand, within RR42_RS00495 at 129.767 kb on - strand, within RR42_RS00495 at 129.767 kb on - strand, within RR42_RS00495 at 129.831 kb on - strand, within RR42_RS00495 at 129.831 kb on - strand, within RR42_RS00495 at 129.831 kb on - strand, within RR42_RS00495 at 129.831 kb on - strand, within RR42_RS00495 at 130.063 kb on + strand, within RR42_RS00495 at 130.063 kb on + strand, within RR42_RS00495 at 130.063 kb on + strand, within RR42_RS00495 at 130.063 kb on + strand, within RR42_RS00495 at 130.064 kb on - strand, within RR42_RS00495 at 130.088 kb on + strand, within RR42_RS00495 at 130.089 kb on - strand, within RR42_RS00495 at 130.233 kb on - strand, within RR42_RS00495 at 130.591 kb on - strand, within RR42_RS00495 at 130.670 kb on + strand, within RR42_RS00495 at 130.671 kb on - strand, within RR42_RS00495 at 130.671 kb on - strand, within RR42_RS00495 at 131.286 kb on - strand, within RR42_RS00500 at 131.315 kb on - strand, within RR42_RS00500 at 131.373 kb on + strand, within RR42_RS00500 at 131.655 kb on + strand, within RR42_RS00500 at 131.655 kb on + strand, within RR42_RS00500 at 131.659 kb on + strand, within RR42_RS00500 at 131.660 kb on - strand, within RR42_RS00500 at 131.667 kb on + strand, within RR42_RS00500 at 131.667 kb on + strand, within RR42_RS00500 at 131.667 kb on + strand, within RR42_RS00500 at 131.668 kb on - strand, within RR42_RS00500 at 131.668 kb on - strand, within RR42_RS00500 at 131.668 kb on - strand, within RR42_RS00500 at 131.668 kb on - strand, within RR42_RS00500 at 131.948 kb on + strand at 131.950 kb on + strand at 131.950 kb on + strand at 131.950 kb on + strand at 131.951 kb on - strand at 131.951 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 127,167 + -0.3 127,167 + +0.4 127,187 + -2.5 127,188 - -2.6 127,417 - RR42_RS00490 0.38 -1.1 127,417 - RR42_RS00490 0.38 +1.9 127,455 + RR42_RS00490 0.44 -2.1 127,456 - RR42_RS00490 0.44 -0.1 127,456 - RR42_RS00490 0.44 +2.0 127,825 + -2.9 127,940 - -0.6 128,078 + -1.3 128,079 - +0.5 128,240 + -0.6 128,240 + +0.4 128,757 - RR42_RS00495 0.21 +0.5 128,757 - RR42_RS00495 0.21 +0.5 129,137 - RR42_RS00495 0.34 -0.5 129,158 + RR42_RS00495 0.35 +0.0 129,391 + RR42_RS00495 0.43 -0.7 129,713 + RR42_RS00495 0.54 -0.6 129,714 - RR42_RS00495 0.54 -0.7 129,767 - RR42_RS00495 0.56 -0.1 129,767 - RR42_RS00495 0.56 -1.2 129,831 - RR42_RS00495 0.58 -1.0 129,831 - RR42_RS00495 0.58 +0.1 129,831 - RR42_RS00495 0.58 -0.3 129,831 - RR42_RS00495 0.58 +1.8 130,063 + RR42_RS00495 0.66 -0.2 130,063 + RR42_RS00495 0.66 +0.9 130,063 + RR42_RS00495 0.66 -1.2 130,063 + RR42_RS00495 0.66 -1.4 130,064 - RR42_RS00495 0.66 -0.6 130,088 + RR42_RS00495 0.67 +0.1 130,089 - RR42_RS00495 0.67 -0.6 130,233 - RR42_RS00495 0.72 -0.4 130,591 - RR42_RS00495 0.84 -0.6 130,670 + RR42_RS00495 0.87 +0.3 130,671 - RR42_RS00495 0.87 +0.7 130,671 - RR42_RS00495 0.87 -1.0 131,286 - RR42_RS00500 0.31 -0.4 131,315 - RR42_RS00500 0.36 +0.4 131,373 + RR42_RS00500 0.44 -0.4 131,655 + RR42_RS00500 0.84 -0.3 131,655 + RR42_RS00500 0.84 -0.5 131,659 + RR42_RS00500 0.85 +0.0 131,660 - RR42_RS00500 0.85 -0.4 131,667 + RR42_RS00500 0.86 -0.2 131,667 + RR42_RS00500 0.86 -0.2 131,667 + RR42_RS00500 0.86 +0.1 131,668 - RR42_RS00500 0.86 -0.6 131,668 - RR42_RS00500 0.86 -0.5 131,668 - RR42_RS00500 0.86 -2.2 131,668 - RR42_RS00500 0.86 -2.3 131,948 + -1.8 131,950 + -0.5 131,950 + -0.9 131,950 + -0.4 131,951 - +1.7 131,951 - -1.0
Or see this region's nucleotide sequence