Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00090 and RR42_RS00095 are separated by 614 nucleotides RR42_RS00095 and RR42_RS00100 overlap by 8 nucleotides RR42_RS00100 and RR42_RS00105 are separated by 101 nucleotides
RR42_RS00090: RR42_RS00090 - hypothetical protein, at 30,826 to 31,176
_RS00090
RR42_RS00095: RR42_RS00095 - hypothetical protein, at 31,791 to 32,333
_RS00095
RR42_RS00100: RR42_RS00100 - hypothetical protein, at 32,326 to 32,760
_RS00100
RR42_RS00105: RR42_RS00105 - hypothetical protein, at 32,862 to 33,203
_RS00105
Position (kb) 31
32
33 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 31.058 kb on + strand, within RR42_RS00090 at 31.059 kb on - strand, within RR42_RS00090 at 31.264 kb on + strand at 31.380 kb on + strand at 31.381 kb on - strand at 31.381 kb on - strand at 31.381 kb on - strand at 31.381 kb on - strand at 31.381 kb on - strand at 31.464 kb on - strand at 31.505 kb on + strand at 31.506 kb on - strand at 31.551 kb on + strand at 31.713 kb on + strand at 31.713 kb on + strand at 31.713 kb on + strand at 31.713 kb on + strand at 31.714 kb on - strand at 31.714 kb on - strand at 32.017 kb on - strand, within RR42_RS00095 at 32.037 kb on + strand, within RR42_RS00095 at 32.037 kb on + strand, within RR42_RS00095 at 32.038 kb on - strand, within RR42_RS00095 at 32.038 kb on - strand, within RR42_RS00095 at 32.038 kb on - strand, within RR42_RS00095 at 32.038 kb on - strand, within RR42_RS00095 at 32.102 kb on + strand, within RR42_RS00095 at 32.103 kb on - strand, within RR42_RS00095 at 32.180 kb on - strand, within RR42_RS00095 at 32.182 kb on + strand, within RR42_RS00095 at 32.182 kb on + strand, within RR42_RS00095 at 32.182 kb on + strand, within RR42_RS00095 at 32.183 kb on - strand, within RR42_RS00095 at 32.248 kb on + strand, within RR42_RS00095 at 32.249 kb on - strand, within RR42_RS00095 at 32.319 kb on + strand at 32.320 kb on - strand at 32.335 kb on + strand at 32.335 kb on + strand at 32.336 kb on - strand at 32.579 kb on + strand, within RR42_RS00100 at 32.651 kb on - strand, within RR42_RS00100 at 32.692 kb on - strand, within RR42_RS00100 at 32.758 kb on + strand at 32.759 kb on - strand at 32.959 kb on + strand, within RR42_RS00105 at 32.960 kb on - strand, within RR42_RS00105 at 32.960 kb on - strand, within RR42_RS00105 at 32.960 kb on - strand, within RR42_RS00105 at 33.163 kb on + strand, within RR42_RS00105 at 33.163 kb on + strand, within RR42_RS00105 at 33.163 kb on + strand, within RR42_RS00105 at 33.163 kb on + strand, within RR42_RS00105 at 33.164 kb on - strand, within RR42_RS00105 at 33.230 kb on + strand at 33.231 kb on - strand at 33.231 kb on - strand at 33.231 kb on - strand at 33.298 kb on + strand at 33.299 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 31,058 + RR42_RS00090 0.66 -0.9 31,059 - RR42_RS00090 0.66 -1.4 31,264 + +0.4 31,380 + +0.0 31,381 - -0.9 31,381 - -0.1 31,381 - +0.7 31,381 - -1.4 31,381 - +0.1 31,464 - +0.3 31,505 + +0.4 31,506 - -0.7 31,551 + -0.9 31,713 + +1.2 31,713 + +0.1 31,713 + -0.2 31,713 + +0.2 31,714 - +0.8 31,714 - +0.4 32,017 - RR42_RS00095 0.42 +0.4 32,037 + RR42_RS00095 0.45 +0.9 32,037 + RR42_RS00095 0.45 -0.9 32,038 - RR42_RS00095 0.45 -0.8 32,038 - RR42_RS00095 0.45 -0.9 32,038 - RR42_RS00095 0.45 +0.7 32,038 - RR42_RS00095 0.45 +0.6 32,102 + RR42_RS00095 0.57 +1.4 32,103 - RR42_RS00095 0.57 -0.0 32,180 - RR42_RS00095 0.72 -0.0 32,182 + RR42_RS00095 0.72 +0.6 32,182 + RR42_RS00095 0.72 +0.9 32,182 + RR42_RS00095 0.72 +0.3 32,183 - RR42_RS00095 0.72 +0.5 32,248 + RR42_RS00095 0.84 +0.8 32,249 - RR42_RS00095 0.84 +1.1 32,319 + +3.0 32,320 - -0.2 32,335 + -0.6 32,335 + +1.4 32,336 - +2.4 32,579 + RR42_RS00100 0.58 +0.7 32,651 - RR42_RS00100 0.75 -0.1 32,692 - RR42_RS00100 0.84 +0.4 32,758 + +1.8 32,759 - -2.2 32,959 + RR42_RS00105 0.28 +0.5 32,960 - RR42_RS00105 0.29 +1.4 32,960 - RR42_RS00105 0.29 +0.1 32,960 - RR42_RS00105 0.29 +0.2 33,163 + RR42_RS00105 0.88 -0.6 33,163 + RR42_RS00105 0.88 -1.1 33,163 + RR42_RS00105 0.88 +1.4 33,163 + RR42_RS00105 0.88 -0.6 33,164 - RR42_RS00105 0.88 +1.1 33,230 + +1.1 33,231 - +0.2 33,231 - -0.4 33,231 - -0.5 33,298 + -0.5 33,299 - -1.6
Or see this region's nucleotide sequence