Experiment: D-Mannitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS22585 and HSERO_RS22590 are separated by 305 nucleotides HSERO_RS22590 and HSERO_RS22595 are separated by 272 nucleotides HSERO_RS22595 and HSERO_RS22600 are separated by 43 nucleotides
HSERO_RS22585: HSERO_RS22585 - amidohydrolase, at 5,178,644 to 5,180,527
_RS22585
HSERO_RS22590: HSERO_RS22590 - hydrolase, at 5,180,833 to 5,181,522
_RS22590
HSERO_RS22595: HSERO_RS22595 - ABC transporter substrate-binding protein, at 5,181,795 to 5,182,037
_RS22595
HSERO_RS22600: HSERO_RS22600 - transcriptional regulator, at 5,182,081 to 5,182,458
_RS22600
Position (kb) 5180
5181
5182 Strain fitness (log2 ratio) -1
0
1 at 5179.847 kb on + strand, within HSERO_RS22585 at 5179.890 kb on - strand, within HSERO_RS22585 at 5179.918 kb on + strand, within HSERO_RS22585 at 5179.938 kb on - strand, within HSERO_RS22585 at 5180.028 kb on - strand, within HSERO_RS22585 at 5180.161 kb on - strand, within HSERO_RS22585 at 5180.219 kb on - strand, within HSERO_RS22585 at 5180.277 kb on - strand, within HSERO_RS22585 at 5180.469 kb on + strand at 5180.505 kb on - strand at 5180.695 kb on + strand at 5181.042 kb on - strand, within HSERO_RS22590 at 5181.052 kb on - strand, within HSERO_RS22590 at 5181.102 kb on + strand, within HSERO_RS22590 at 5181.113 kb on + strand, within HSERO_RS22590 at 5181.266 kb on + strand, within HSERO_RS22590 at 5181.277 kb on + strand, within HSERO_RS22590 at 5181.399 kb on - strand, within HSERO_RS22590 at 5181.433 kb on + strand at 5181.433 kb on + strand, within HSERO_RS22590 at 5181.459 kb on + strand at 5181.467 kb on - strand at 5181.467 kb on - strand at 5181.472 kb on - strand at 5181.472 kb on - strand at 5181.497 kb on - strand at 5181.630 kb on - strand at 5181.665 kb on + strand at 5181.666 kb on + strand at 5181.778 kb on + strand at 5181.812 kb on - strand at 5181.818 kb on + strand at 5181.826 kb on - strand, within HSERO_RS22595 at 5181.850 kb on - strand, within HSERO_RS22595 at 5181.850 kb on - strand, within HSERO_RS22595 at 5181.893 kb on + strand, within HSERO_RS22595 at 5181.972 kb on + strand, within HSERO_RS22595 at 5182.031 kb on + strand at 5182.271 kb on + strand, within HSERO_RS22600 at 5182.271 kb on + strand, within HSERO_RS22600 at 5182.425 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannitol (C) remove 5,179,847 + HSERO_RS22585 0.64 +0.9 5,179,890 - HSERO_RS22585 0.66 +0.4 5,179,918 + HSERO_RS22585 0.68 -0.1 5,179,938 - HSERO_RS22585 0.69 -0.1 5,180,028 - HSERO_RS22585 0.73 +0.6 5,180,161 - HSERO_RS22585 0.81 +0.1 5,180,219 - HSERO_RS22585 0.84 -0.1 5,180,277 - HSERO_RS22585 0.87 -0.5 5,180,469 + +0.1 5,180,505 - -0.3 5,180,695 + -0.2 5,181,042 - HSERO_RS22590 0.30 +0.4 5,181,052 - HSERO_RS22590 0.32 -0.2 5,181,102 + HSERO_RS22590 0.39 +0.1 5,181,113 + HSERO_RS22590 0.41 +0.2 5,181,266 + HSERO_RS22590 0.63 +1.5 5,181,277 + HSERO_RS22590 0.64 +0.1 5,181,399 - HSERO_RS22590 0.82 +0.8 5,181,433 + -0.1 5,181,433 + HSERO_RS22590 0.87 +1.1 5,181,459 + +0.0 5,181,467 - -0.8 5,181,467 - -0.6 5,181,472 - -0.3 5,181,472 - -0.7 5,181,497 - +0.8 5,181,630 - +0.1 5,181,665 + +1.3 5,181,666 + -0.4 5,181,778 + -0.0 5,181,812 - +0.1 5,181,818 + -0.1 5,181,826 - HSERO_RS22595 0.13 -0.3 5,181,850 - HSERO_RS22595 0.23 +0.4 5,181,850 - HSERO_RS22595 0.23 -0.1 5,181,893 + HSERO_RS22595 0.40 +0.1 5,181,972 + HSERO_RS22595 0.73 +0.4 5,182,031 + -0.6 5,182,271 + HSERO_RS22600 0.50 -0.3 5,182,271 + HSERO_RS22600 0.50 -0.4 5,182,425 + -0.3
Or see this region's nucleotide sequence