Experiment: D-Mannitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02200 and HSERO_RS02205 overlap by 1 nucleotides HSERO_RS02205 and HSERO_RS02210 are separated by 46 nucleotides HSERO_RS02210 and HSERO_RS02215 are separated by 216 nucleotides
HSERO_RS02200: HSERO_RS02200 - mannitol ABC transporter permease, at 480,529 to 481,344
_RS02200
HSERO_RS02205: HSERO_RS02205 - phosphatase, at 481,344 to 482,078
_RS02205
HSERO_RS02210: HSERO_RS02210 - sugar ABC transporter ATP-binding protein, at 482,125 to 483,243
_RS02210
HSERO_RS02215: HSERO_RS02215 - D-arabinitol 4-dehydrogenase, at 483,460 to 484,893
_RS02215
Position (kb) 482
483
484 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 481.173 kb on + strand, within HSERO_RS02200 at 481.230 kb on + strand, within HSERO_RS02200 at 481.238 kb on - strand, within HSERO_RS02200 at 481.287 kb on + strand at 481.318 kb on + strand at 481.318 kb on + strand at 481.812 kb on - strand, within HSERO_RS02205 at 481.883 kb on - strand, within HSERO_RS02205 at 481.965 kb on + strand, within HSERO_RS02205 at 482.066 kb on - strand at 482.105 kb on - strand at 482.149 kb on - strand at 482.372 kb on + strand, within HSERO_RS02210 at 482.439 kb on + strand, within HSERO_RS02210 at 482.492 kb on + strand, within HSERO_RS02210 at 482.602 kb on + strand, within HSERO_RS02210 at 482.690 kb on + strand, within HSERO_RS02210 at 482.818 kb on + strand, within HSERO_RS02210 at 483.190 kb on + strand at 483.352 kb on + strand at 483.361 kb on + strand at 483.457 kb on + strand at 483.465 kb on - strand at 483.465 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannitol (C) remove 481,173 + HSERO_RS02200 0.79 -1.4 481,230 + HSERO_RS02200 0.86 -3.2 481,238 - HSERO_RS02200 0.87 -1.2 481,287 + -3.0 481,318 + -2.9 481,318 + -2.8 481,812 - HSERO_RS02205 0.64 -1.1 481,883 - HSERO_RS02205 0.73 -2.9 481,965 + HSERO_RS02205 0.84 -1.4 482,066 - -2.2 482,105 - -3.0 482,149 - -2.8 482,372 + HSERO_RS02210 0.22 -5.0 482,439 + HSERO_RS02210 0.28 -2.1 482,492 + HSERO_RS02210 0.33 -3.9 482,602 + HSERO_RS02210 0.43 -3.5 482,690 + HSERO_RS02210 0.50 -3.8 482,818 + HSERO_RS02210 0.62 -1.4 483,190 + -1.4 483,352 + -0.2 483,361 + +0.1 483,457 + -5.5 483,465 - -4.8 483,465 - -6.6
Or see this region's nucleotide sequence