Experiment: D-Mannitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02190 and HSERO_RS02195 are separated by 182 nucleotides HSERO_RS02195 and HSERO_RS02200 overlap by 4 nucleotides HSERO_RS02200 and HSERO_RS02205 overlap by 1 nucleotides
HSERO_RS02190: HSERO_RS02190 - sugar ABC transporter substrate-binding protein, at 478,020 to 479,375
_RS02190
HSERO_RS02195: HSERO_RS02195 - sugar ABC transporter permease, at 479,558 to 480,532
_RS02195
HSERO_RS02200: HSERO_RS02200 - mannitol ABC transporter permease, at 480,529 to 481,344
_RS02200
HSERO_RS02205: HSERO_RS02205 - phosphatase, at 481,344 to 482,078
_RS02205
Position (kb) 479
480
481 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 478.591 kb on + strand, within HSERO_RS02190 at 478.634 kb on - strand, within HSERO_RS02190 at 478.669 kb on - strand at 478.749 kb on - strand, within HSERO_RS02190 at 478.959 kb on - strand, within HSERO_RS02190 at 479.029 kb on + strand, within HSERO_RS02190 at 479.111 kb on - strand, within HSERO_RS02190 at 479.217 kb on - strand, within HSERO_RS02190 at 479.255 kb on - strand at 479.442 kb on - strand at 479.462 kb on + strand at 479.582 kb on - strand at 479.584 kb on - strand at 479.589 kb on - strand at 479.708 kb on + strand, within HSERO_RS02195 at 479.838 kb on - strand, within HSERO_RS02195 at 479.877 kb on + strand, within HSERO_RS02195 at 479.877 kb on + strand, within HSERO_RS02195 at 479.882 kb on + strand, within HSERO_RS02195 at 479.885 kb on - strand, within HSERO_RS02195 at 480.244 kb on - strand, within HSERO_RS02195 at 480.404 kb on + strand, within HSERO_RS02195 at 480.413 kb on - strand, within HSERO_RS02195 at 480.508 kb on + strand at 480.516 kb on - strand at 480.516 kb on - strand at 480.614 kb on - strand at 480.648 kb on - strand, within HSERO_RS02200 at 480.705 kb on - strand, within HSERO_RS02200 at 480.727 kb on + strand, within HSERO_RS02200 at 480.855 kb on + strand, within HSERO_RS02200 at 480.929 kb on - strand, within HSERO_RS02200 at 480.964 kb on + strand, within HSERO_RS02200 at 481.173 kb on + strand, within HSERO_RS02200 at 481.230 kb on + strand, within HSERO_RS02200 at 481.238 kb on - strand, within HSERO_RS02200 at 481.287 kb on + strand at 481.318 kb on + strand at 481.318 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannitol (C) remove 478,591 + HSERO_RS02190 0.42 -2.7 478,634 - HSERO_RS02190 0.45 -1.5 478,669 - -1.1 478,749 - HSERO_RS02190 0.54 -0.7 478,959 - HSERO_RS02190 0.69 -3.7 479,029 + HSERO_RS02190 0.74 -1.7 479,111 - HSERO_RS02190 0.80 -3.1 479,217 - HSERO_RS02190 0.88 -4.3 479,255 - -0.1 479,442 - -3.0 479,462 + -1.4 479,582 - -4.1 479,584 - -2.8 479,589 - -3.1 479,708 + HSERO_RS02195 0.15 -4.0 479,838 - HSERO_RS02195 0.29 -1.1 479,877 + HSERO_RS02195 0.33 -5.1 479,877 + HSERO_RS02195 0.33 -1.4 479,882 + HSERO_RS02195 0.33 -4.1 479,885 - HSERO_RS02195 0.34 -3.5 480,244 - HSERO_RS02195 0.70 -2.3 480,404 + HSERO_RS02195 0.87 -0.2 480,413 - HSERO_RS02195 0.88 -3.2 480,508 + -1.9 480,516 - -4.3 480,516 - -3.2 480,614 - -1.4 480,648 - HSERO_RS02200 0.15 -3.1 480,705 - HSERO_RS02200 0.22 -3.1 480,727 + HSERO_RS02200 0.24 -1.9 480,855 + HSERO_RS02200 0.40 -2.6 480,929 - HSERO_RS02200 0.49 -5.4 480,964 + HSERO_RS02200 0.53 -1.1 481,173 + HSERO_RS02200 0.79 -1.4 481,230 + HSERO_RS02200 0.86 -3.2 481,238 - HSERO_RS02200 0.87 -1.2 481,287 + -3.0 481,318 + -2.9 481,318 + -2.8
Or see this region's nucleotide sequence