Experiment: D-Mannitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02185 and HSERO_RS02190 are separated by 347 nucleotides HSERO_RS02190 and HSERO_RS02195 are separated by 182 nucleotides
HSERO_RS02185: HSERO_RS02185 - DeoR family transcriptional regulator, at 476,710 to 477,672
_RS02185
HSERO_RS02190: HSERO_RS02190 - sugar ABC transporter substrate-binding protein, at 478,020 to 479,375
_RS02190
HSERO_RS02195: HSERO_RS02195 - sugar ABC transporter permease, at 479,558 to 480,532
_RS02195
Position (kb) 478
479
480 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 477.654 kb on - strand at 477.716 kb on - strand at 477.765 kb on - strand at 477.771 kb on + strand at 477.789 kb on - strand at 477.799 kb on - strand at 477.861 kb on + strand at 477.968 kb on - strand at 478.021 kb on + strand at 478.051 kb on + strand at 478.059 kb on - strand at 478.066 kb on + strand at 478.110 kb on + strand at 478.110 kb on + strand at 478.167 kb on - strand, within HSERO_RS02190 at 478.184 kb on - strand, within HSERO_RS02190 at 478.191 kb on - strand, within HSERO_RS02190 at 478.226 kb on + strand, within HSERO_RS02190 at 478.237 kb on + strand, within HSERO_RS02190 at 478.237 kb on + strand, within HSERO_RS02190 at 478.237 kb on + strand, within HSERO_RS02190 at 478.245 kb on - strand, within HSERO_RS02190 at 478.388 kb on - strand, within HSERO_RS02190 at 478.411 kb on - strand, within HSERO_RS02190 at 478.411 kb on - strand, within HSERO_RS02190 at 478.422 kb on + strand, within HSERO_RS02190 at 478.591 kb on + strand, within HSERO_RS02190 at 478.634 kb on - strand, within HSERO_RS02190 at 478.669 kb on - strand at 478.749 kb on - strand, within HSERO_RS02190 at 478.959 kb on - strand, within HSERO_RS02190 at 479.029 kb on + strand, within HSERO_RS02190 at 479.111 kb on - strand, within HSERO_RS02190 at 479.217 kb on - strand, within HSERO_RS02190 at 479.255 kb on - strand at 479.442 kb on - strand at 479.462 kb on + strand at 479.582 kb on - strand at 479.584 kb on - strand at 479.589 kb on - strand at 479.708 kb on + strand, within HSERO_RS02195 at 479.838 kb on - strand, within HSERO_RS02195 at 479.877 kb on + strand, within HSERO_RS02195 at 479.877 kb on + strand, within HSERO_RS02195 at 479.882 kb on + strand, within HSERO_RS02195 at 479.885 kb on - strand, within HSERO_RS02195 at 480.244 kb on - strand, within HSERO_RS02195
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannitol (C) remove 477,654 - -3.5 477,716 - -3.4 477,765 - -1.1 477,771 + -1.9 477,789 - -0.4 477,799 - -0.5 477,861 + -2.1 477,968 - -3.4 478,021 + -3.3 478,051 + -4.0 478,059 - -1.8 478,066 + -1.9 478,110 + -3.9 478,110 + -1.3 478,167 - HSERO_RS02190 0.11 -1.5 478,184 - HSERO_RS02190 0.12 -3.9 478,191 - HSERO_RS02190 0.13 -2.0 478,226 + HSERO_RS02190 0.15 -2.5 478,237 + HSERO_RS02190 0.16 -3.7 478,237 + HSERO_RS02190 0.16 -3.8 478,237 + HSERO_RS02190 0.16 -2.1 478,245 - HSERO_RS02190 0.17 -3.3 478,388 - HSERO_RS02190 0.27 -2.4 478,411 - HSERO_RS02190 0.29 -0.7 478,411 - HSERO_RS02190 0.29 -2.9 478,422 + HSERO_RS02190 0.30 -2.8 478,591 + HSERO_RS02190 0.42 -2.7 478,634 - HSERO_RS02190 0.45 -1.5 478,669 - -1.1 478,749 - HSERO_RS02190 0.54 -0.7 478,959 - HSERO_RS02190 0.69 -3.7 479,029 + HSERO_RS02190 0.74 -1.7 479,111 - HSERO_RS02190 0.80 -3.1 479,217 - HSERO_RS02190 0.88 -4.3 479,255 - -0.1 479,442 - -3.0 479,462 + -1.4 479,582 - -4.1 479,584 - -2.8 479,589 - -3.1 479,708 + HSERO_RS02195 0.15 -4.0 479,838 - HSERO_RS02195 0.29 -1.1 479,877 + HSERO_RS02195 0.33 -5.1 479,877 + HSERO_RS02195 0.33 -1.4 479,882 + HSERO_RS02195 0.33 -4.1 479,885 - HSERO_RS02195 0.34 -3.5 480,244 - HSERO_RS02195 0.70 -2.3
Or see this region's nucleotide sequence